Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d24
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.90 
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              30   1.6  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)                      29   2.8  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        28   8.4  
SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   28   8.4  

>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 184 WNPTNGTPKWWRSRSTFHRLLWTH 255
           W+P   T KWW  R+TF  +   H
Sbjct: 42  WHPGRSTTKWWTRRATFITIFCVH 65


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 189  PNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGK 305
            P K  T+V E   H  +   DT   D+E  +  V VDGK
Sbjct: 1711 PQKTSTEVPEPAKHFKEEIQDTHGEDDEEVEEFVEVDGK 1749


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 152  SNYQHVLGINNGTQQTVHPSGGEAVPHFTGCYGH 253
            SN  HVLG  NG    VH +G  A  H  G +G+
Sbjct: 2301 SNGNHVLGNGNGNGNQVHSNGNHA--HSNGFHGN 2332


>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
          Length = 782

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 189 PNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGK 305
           P K  T+V E   H      DT   D+E  +  V VDGK
Sbjct: 242 PQKTSTEVPEPAKHFKDEIQDTHGKDDEEVEEFVEVDGK 280


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 187 NPTNGTPKWWRSRSTFHRLLWTHQLVIMSHVK*WLLLMERTFSCALS 327
           NP+  TPK  RSR +      +H L + S+ + +LL   R   C++S
Sbjct: 145 NPSEDTPKAQRSRKSSPLHRGSHALGLCSNSRGYLLYFYRKQPCSIS 191


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = -2

Query: 319 HTRKFFPSTTTIT*H----GSLSPVDVSIAACEMWNGFSTTWVYRLLGSI 182
           HT   F S  T   H    G L PV  +   C++W G+   W  RLL  +
Sbjct: 696 HTMAPFNSQNTFFMHKGFWGLLIPVTPTFRVCDIWRGY---WAQRLLWEV 742


>SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 660

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 395 QKGNRVSCFEIQVKWNLNAFVFLESAHEKVLSINNNHHLTW 273
           QK  R S   I+V ++LN  +   S+HEK L +     LTW
Sbjct: 563 QKVTRKS-HPIEVPYHLNGSLLTVSSHEKDLGVRVASDLTW 602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,455,916
Number of Sequences: 59808
Number of extensions: 329462
Number of successful extensions: 688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)