Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d24
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25340.1 68417.m03647 immunophilin-related / FKBP-type peptid...    45   6e-05
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept...    42   5e-04
At3g49510.1 68416.m05411 F-box family protein contains Pfam PF00...    32   0.32 
At2g34880.1 68415.m04282 transcription factor jumonji (jmj) fami...    31   0.56 
At3g16740.1 68416.m02137 F-box family protein contains F-box dom...    30   1.3  
At1g20860.1 68414.m02613 phosphate transporter family protein si...    29   3.9  
At1g76430.1 68414.m08885 phosphate transporter family protein si...    28   5.2  
At3g24580.1 68416.m03088 F-box family protein contains F-box dom...    28   6.9  

>At4g25340.1 68417.m03647 immunophilin-related / FKBP-type
           peptidyl-prolyl cis-trans isomerase-related immunophilin
           FKBP46 - Spodoptera frugiperda (fall
           armyworm),PIR2:A55320
          Length = 477

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = +3

Query: 168 FWGLIMEPNK--RYTQVVEK-PFHISQAAMDTSTGDNEPCQVMVVVDGKNFLVCTLQKNK 338
           FWGL ++P K   Y    E+   H++QA + T     +      + D     +C+L  NK
Sbjct: 3   FWGLEVKPGKPQAYNPKNEQGKIHVTQATLGTGLSKEKSVIQCSIGDKAPIALCSLLPNK 62

Query: 339 CIQVPLDLYFKTGDS-IAFLTNGKCNVHLTGYL 434
               PL+L F   D  + F   G  ++HL+G+L
Sbjct: 63  IECCPLNLEFDDDDEPVEFTVTGDRSIHLSGFL 95


>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative contains
           Pfam profile: PF00254, FKBP-type peptidyl-prolyl
           cis-trans isomerases
          Length = 694

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 32/68 (47%)
 Frame = +3

Query: 228 HISQAAMDTSTGDNEPCQVMVVVDGKNFLVCTLQKNKCIQVPLDLYFKTGDSIAFLTNGK 407
           H+SQA +   T  N       V +    L+C L  +K     L+L F+  D + F   G 
Sbjct: 223 HLSQATLGHGTATNRSILQCNVGNKSPLLLCVLTPDKVDSCQLNLEFEETDEVIFSVIGP 282

Query: 408 CNVHLTGY 431
            +VHLTGY
Sbjct: 283 RSVHLTGY 290


>At3g49510.1 68416.m05411 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 662

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 184 WNPTNGTPKWWRSRSTFHR 240
           WNP  G  KW R R+TFHR
Sbjct: 123 WNPYLGQTKWIRPRNTFHR 141



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 184 WNPTNGTPKWWRSRSTFHR 240
           WNP     KW R R+TFHR
Sbjct: 392 WNPYLCQTKWIRLRNTFHR 410


>At2g34880.1 68415.m04282 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 806

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 357 QVELECICFSGECTRESSFHQQQPSLDMAHYH 262
           QV+ EC   +GEC + S   +    +D+A YH
Sbjct: 605 QVQEECFDLNGECNKSSEICEDASIMDLAAYH 636


>At3g16740.1 68416.m02137 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 391

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 184 WNPTNGTPKWWRSRSTFHRL 243
           WNP +G  +W + R+++HRL
Sbjct: 125 WNPYSGQTRWIKPRNSYHRL 144


>At1g20860.1 68414.m02613 phosphate transporter family protein
           similar to phosphate transporter [Catharanthus roseus]
           GI:2208908, inorganic phosphate transporter 1 [Solanum
           tuberosum] GI:1420871; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 534

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 126 VFLVIYASDLTINMFWGLIMEPNKRYTQVVEKPFHISQAAMD 251
           + L+I A    +  +W ++M    RYT +VE   +I QAA D
Sbjct: 205 LILMIGALPAALTFYWRMLMPETARYTALVEN--NIVQAAKD 244


>At1g76430.1 68414.m08885 phosphate transporter family protein
           similar to phosphate transporters from [Catharanthus
           roseus] GI:2208908 and [Nicotiana tabacum] GI:12641853,
           transmembrane protein [Solanum tuberosum] GI:17065936;
           contains Pfam profile: PF00083 major facilitator
           superfamily protein
          Length = 532

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 126 VFLVIYASDLTINMFWGLIMEPNKRYTQVVEKPFHISQAAMD 251
           + L+I A    +  +W ++M    RYT +VE   ++ QAA D
Sbjct: 213 LILMIGALPAALTFYWRMLMPETARYTALVEN--NVVQAAKD 252


>At3g24580.1 68416.m03088 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 378

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 184 WNPTNGTPKWWRSRSTFHRL-LWTHQL 261
           WNP  G  +W  S + FH+L ++T+ L
Sbjct: 127 WNPYWGQTRWIESTNNFHKLDMYTYAL 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,221,663
Number of Sequences: 28952
Number of extensions: 224056
Number of successful extensions: 496
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)