Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d23
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    38   0.001
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    27   3.2  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   9.7  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   9.7  

>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +3

Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
           +S   I  H+ +Y KP LQ+ ++RIL M+ IY+  + + +   +     +  RE YE
Sbjct: 19  LSCISIITHLKNYKKPVLQRSVVRILMMIVIYSSVSFLSVYNEKIGSIFEPFREIYE 75


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 519 IVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLR 650
           ++HY +P L   I   +++V I A+N L    F E   +L +++
Sbjct: 149 VIHYWRPDLNVGIWVAVFLVVILAINLLHVKYFGEVEFWLSAVK 192


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 389 GASAYINSTFYKQWVQEIRSGST 457
           G SA + +TF  +W QE+ S ST
Sbjct: 318 GTSATLFNTFLLEWSQEVTSNST 340


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 467  WLRAACSAYIYLADNSA-HCSLY*AFVTEAHYKNTMDGAYICPKCIDWT 610
            W   +C +   L  N+  HC L     + +  K T++G ++   C  WT
Sbjct: 888  WACLSCRSNDNLGQNNDNHCVLCLQSASHSLMKKTVEGNWVHLICASWT 936


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 406 NIGTSTTIRMTYRAMNTGLIHNLH*LKNEITAF 308
           NI   TTI     A+  GL+HN+  L+ +   F
Sbjct: 329 NIHADTTIEEICNAVRGGLLHNIRYLQEKHICF 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,518
Number of Sequences: 5004
Number of extensions: 49387
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)