Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8d23
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0530 - 34545699-34546013,34546121-34546354,34547006-345470... 62 5e-10
03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016... 60 1e-09
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272... 51 9e-07
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668... 49 4e-06
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 46 2e-05
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313... 44 1e-04
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926... 44 1e-04
07_01_0961 + 8070992-8071015,8071016-8071089,8073051-8073200,807... 30 1.9
09_02_0418 - 8926087-8926112,8926327-8926387,8926960-8927196 29 4.4
>03_06_0530 -
34545699-34546013,34546121-34546354,34547006-34547078,
34548226-34548299,34548852-34549004
Length = 282
Score = 61.7 bits (143), Expect = 5e-10
Identities = 23/57 (40%), Positives = 42/57 (73%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
I++ I +H++HY +P Q+ I+R+++MVP+YA+ + + L P+ SIY +S+RE Y+
Sbjct: 22 IALVHIYRHLLHYAEPIYQRFIVRLIFMVPVYAVMSFLSLILPDNSIYFNSIREIYD 78
>03_04_0019 +
16500877-16501029,16501184-16501240,16501560-16501668,
16501837-16502021,16502103-16502182,16502869-16503085,
16503394-16503633,16503720-16504028
Length = 449
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/57 (47%), Positives = 37/57 (64%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
+S+W I QH+ Y+ P QK II +L+MVP+YA ++I L E S+ D LR CYE
Sbjct: 35 VSLWLILQHLRSYSNPEEQKWIIAVLFMVPVYASESIISLWHSEFSLACDILRNCYE 91
>02_05_0259 -
27226378-27226398,27226643-27226813,27227063-27227284,
27227508-27227668,27227933-27227996,27228002-27228194,
27228499-27228587,27228668-27228852,27229671-27229779,
27229880-27229936,27230023-27230175
Length = 474
Score = 50.8 bits (116), Expect = 9e-07
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
+S++ I QH+ Y P QK ++ ++ MVP YA+ + + L P+ S+Y LR+ YE
Sbjct: 35 LSMYLIFQHLSAYNNPEEQKFVLGVILMVPCYAVESYVSLVNPDTSVYCGILRDAYE 91
>04_04_0803 -
28165828-28166136,28166257-28166505,28166628-28166889,
28168116-28168204,28168286-28168342,28168443-28168595
Length = 372
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
+SI+ I +H+ Y P QK ++ ++ MVP YA+ + + L P S+Y LR+ YE
Sbjct: 35 LSIYLIFEHLSAYNNPEEQKFVLGVILMVPCYAIESYVSLINPNTSVYCGILRDGYE 91
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Frame = +3
Query: 507 ITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQS----IYLDSLRECYE 662
++QH+ ++ P QK I+ I+ M P+YA+N+ +GL + S +LD+++ECYE
Sbjct: 39 VSQHLFYWKNPKEQKAILIIVLMAPLYAINSFVGLLDIKGSKTFFTFLDAVKECYE 94
>05_06_0083 +
25429958-25429967,25431035-25431144,25431286-25431342,
25431828-25431936,25432329-25432513,25432595-25432683,
25432877-25433132,25433623-25433865,25433955-25434266
Length = 456
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
+S++ I +H+ Y +P QK +I ++ MVP+YA+ + L + + +R+CYE
Sbjct: 24 LSLFLIFEHLCAYHQPEEQKFLIGLILMVPVYAVQSFFSLLNSNVAFICELMRDCYE 80
>06_03_1475 -
30391555-30391890,30391982-30392233,30392358-30392619,
30393232-30393320,30393408-30393592,30393673-30393781,
30393886-30393942,30394047-30394196
Length = 479
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
+S++ + H+ Y P QK ++ ++ MVP YA+ + I L P S+ ++ LR+ YE
Sbjct: 34 LSLFLLFNHLSAYKNPEEQKFLVGVILMVPCYAVESYISLVNPSISVDIEILRDGYE 90
>07_01_0961 +
8070992-8071015,8071016-8071089,8073051-8073200,
8073307-8073592,8074077-8074220,8074357-8074665
Length = 328
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 573 MVPIYALNALIGLEFPEQSIYLDSLRECYE 662
+V +YA+ + + L P +IY +S+RE Y+
Sbjct: 6 IVQVYAVMSFLSLVLPGSAIYFNSIREIYD 35
>09_02_0418 - 8926087-8926112,8926327-8926387,8926960-8927196
Length = 107
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 353 TCVHCSICHSNCGASAYINSTFYKQWVQEIRSGSTRWRWL 472
TC S S+ G Y + + + ++E GS +WRW+
Sbjct: 26 TCSIVSRMPSSTGTGQYFRESSWSRKLKETCIGSKQWRWI 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,325
Number of Sequences: 37544
Number of extensions: 270931
Number of successful extensions: 536
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -