Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d23
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical pr...    53   2e-07
AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine re...    30   1.7  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    29   2.9  
AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical ...    29   2.9  
U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    28   6.8  
Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/59 (42%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
 Frame = +3

Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYL--DSLRECYE 662
           I+  QI QH+  Y+ P+ Q+ I+RIL++VPIYA ++ + L F   ++Y+  +S+R+CYE
Sbjct: 31  ITSHQIYQHLRFYSCPAEQRWIVRILFIVPIYAFDSWLSLIFFSDNVYIYFNSIRDCYE 89


>Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/59 (42%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
 Frame = +3

Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYL--DSLRECYE 662
           I+  QI QH+  Y+ P+ Q+ I+RIL++VPIYA ++ + L F   ++Y+  +S+R+CYE
Sbjct: 31  ITSHQIYQHLRFYSCPAEQRWIVRILFIVPIYAFDSWLSLIFFSDNVYIYFNSIRDCYE 89


>AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine
           receptor, class z protein70 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 68  TLYCVVNKCTFVIILFKLYYILN*LLIFVLTIYHYRYNL 184
           TLY  +   T  +++FKL YIL   +IF+L +  +   L
Sbjct: 213 TLYTYIFWLTITVVVFKLIYILLFTIIFILFLPQFSIQL 251


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 192 NKTKTRIKITYNIAFVGLCSWCYL 263
           +K  TRI ITY I F G+ SW  L
Sbjct: 226 SKKLTRIAITYCIVFTGVLSWTVL 249


>AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.10 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -2

Query: 427 LFIECTINIGTSTTIRMTYRAMN--TGLIHNLH*LKNEITAFEHIIPLACDEKKINYK*H 254
           + + C +N   S T   T  +++  + ++H+LH  ++    F+ I  LA D++K   +  
Sbjct: 109 VLVPCPVNSNPSMTSSSTKPSVSNTSAMVHSLHEFESTNNVFDDIQILALDDRKALQEVL 168

Query: 253 QLHNPTN 233
            L N +N
Sbjct: 169 MLTNGSN 175


>U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical
           protein T16A1.2 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 543 LQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSL 647
           L+  +IR  W   IY++N  + +EF E +  L  L
Sbjct: 661 LENRLIRATWWDDIYSVNKTVKVEFEEAAFALSKL 695


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 162 YTITATIWVKNKTKTRIKITYNIAFVGLCSWCYL*FIF 275
           Y I    W++++    +   + ++F+ LCS C L F+F
Sbjct: 46  YNIGIFQWLRDQDSVYLYSNFIVSFLVLCSVCLLIFVF 83


>Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical
           protein C44F1.2 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 362 HCSICHSNCGASAYINST 415
           H SICH  C +  Y+NST
Sbjct: 151 HKSICHGQCQSRNYMNST 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,968,955
Number of Sequences: 27780
Number of extensions: 275081
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)