Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d23
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.85 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.5  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   6.0  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   6.0  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   6.0  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   6.0  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   6.0  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   6.0  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   6.0  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   6.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.9  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.9  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 82  SKQVYIRNNFI*IILYFKLIVNIRINHIPLPLQFG 186
           +K  Y  NN+   + Y   I+NI    +P+P+ +G
Sbjct: 102 NKYNYNNNNYNKKLYYKNYIINIEQIPVPVPVYYG 136


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 46  VCQLHSYYTLLCSKQVYIRNNFI*IILYFKLIVNIRINHIPLPLQFG 186
           +  L + Y    +   Y  NN+   + Y   I+NI    +P+P+ +G
Sbjct: 315 ISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINIEQIPVPVPVYYG 361


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 165 YMVNTNINN*FKI*YNLNKI 106
           Y  N N NN  K+ YN+N I
Sbjct: 97  YNNNNNYNNYKKLYYNINYI 116


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 165 YMVNTNINN*FKI*YNLNKI 106
           Y  N N NN  K+ YN+N I
Sbjct: 97  YNNNNNYNNYKKLYYNINYI 116


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 165 YMVNTNINN*FKI*YNLNKI 106
           Y  N N NN  K+ YN+N I
Sbjct: 97  YNNNNNYNNYKKLYYNINYI 116


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 165 YMVNTNINN*FKI*YNLNKI 106
           Y  N N NN  K+ YN+N I
Sbjct: 97  YNNNNNYNNYKKLYYNINYI 116


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 165 YMVNTNINN*FKI*YNLNKI 106
           Y  N N NN  K+ YN+N I
Sbjct: 97  YNNNNNYNNYKKLYYNINYI 116


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 165 YMVNTNINN*FKI*YNLNKI 106
           Y  N N NN  K+ YN+N I
Sbjct: 97  YNNNNNYNNYKKLYYNINYI 116


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 165 YMVNTNINN*FKI*YNLNKI 106
           Y  N N NN  K+ YN+N I
Sbjct: 97  YNNNNNYNNYKKLYYNINYI 116


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 165 YMVNTNINN*FKI*YNLNKI 106
           Y  N N NN  K+ YN+N I
Sbjct: 97  YNNNNNYNNYKKLYYNINYI 116


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 80  VVNKCTFVIILFKLYYILN*LLIFVLTIY 166
           V+ KC    + F    + N LLI + T+Y
Sbjct: 663 VILKCNIQDMSFLFSQLYNALLILISTVY 691


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 80  VVNKCTFVIILFKLYYILN*LLIFVLTIY 166
           V+ KC    + F    + N LLI + T+Y
Sbjct: 753 VILKCNIQDMSFLFSQLYNALLILISTVY 781


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 506 LPNRYRHCKQHEATSNEYSLI 444
           +PNRYR  KQ     N  + I
Sbjct: 780 IPNRYREAKQIYKVGNVQAYI 800


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 124 LYFKLIVNIRINHIPLPLQFG 186
           LY   I+NI    +P+P+ +G
Sbjct: 116 LYKNYIINIEQIPVPVPVYYG 136


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 124 LYFKLIVNIRINHIPLPLQFG 186
           LY   I+NI    +P+P+ +G
Sbjct: 116 LYKNYIINIEQIPVPVPVYYG 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,354
Number of Sequences: 438
Number of extensions: 3823
Number of successful extensions: 24
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)