Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8d23
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26740.2 68418.m03164 expressed protein contains Pfam profile... 69 4e-12
At5g26740.1 68418.m03163 expressed protein contains Pfam profile... 69 4e-12
At3g05940.1 68416.m00676 expressed protein contains Pfam profile... 66 3e-11
At1g23070.1 68414.m02884 hypothetical protein contains Pfam prof... 58 7e-09
At1g11200.1 68414.m01283 expressed protein contains Pfam profile... 50 2e-06
At4g21570.1 68417.m03120 expressed protein contains Pfam profile... 48 6e-06
At1g77220.1 68414.m08994 expressed protein contains Pfam profile... 47 1e-05
At4g38360.2 68417.m05424 expressed protein contains Pfam profile... 44 7e-05
At4g38360.1 68417.m05423 expressed protein contains Pfam profile... 44 7e-05
At3g27540.1 68416.m03442 glycosyl transferase family 17 protein ... 28 6.4
>At5g26740.2 68418.m03164 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 422
Score = 68.5 bits (160), Expect = 4e-12
Identities = 26/57 (45%), Positives = 45/57 (78%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
++I+ I +H+++YT+P+ Q++I+RI++MVP+YA + + L P+ SIY DS+RE YE
Sbjct: 23 LAIFHIYRHLLNYTEPTYQRYIVRIIFMVPVYAFMSFLSLVLPKSSIYFDSIREVYE 79
>At5g26740.1 68418.m03163 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 422
Score = 68.5 bits (160), Expect = 4e-12
Identities = 26/57 (45%), Positives = 45/57 (78%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
++I+ I +H+++YT+P+ Q++I+RI++MVP+YA + + L P+ SIY DS+RE YE
Sbjct: 23 LAIFHIYRHLLNYTEPTYQRYIVRIIFMVPVYAFMSFLSLVLPKSSIYFDSIREVYE 79
>At3g05940.1 68416.m00676 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 422
Score = 65.7 bits (153), Expect = 3e-11
Identities = 25/57 (43%), Positives = 45/57 (78%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
++++ I +H+++YT+P Q++I+RI++MVP+YAL + + L P+ SIY +S+RE YE
Sbjct: 23 LALFHIYKHLLNYTEPIYQRYIVRIVFMVPVYALMSFLALVLPKSSIYFNSIREVYE 79
>At1g23070.1 68414.m02884 hypothetical protein contains Pfam profile
PF03619: Domain of unknown function
Length = 414
Score = 57.6 bits (133), Expect = 7e-09
Identities = 25/57 (43%), Positives = 38/57 (66%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
+S++ I QH+ YT P+ QK I+ +L+MVP+YA ++I L + S+ D LR CYE
Sbjct: 30 LSLYSILQHLRFYTNPAEQKWIVSVLFMVPVYATESIISLSNSKFSLPCDILRNCYE 86
>At1g11200.1 68414.m01283 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 295
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/56 (37%), Positives = 40/56 (71%), Gaps = 4/56 (7%)
Frame = +3
Query: 507 ITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQS----IYLDSLRECYE 662
++QH+ ++ KP+ Q+ I+ I+ M P+YA+N+ +GL + S ++LD+++ECYE
Sbjct: 32 VSQHLFYWKKPNEQRAILIIVLMAPVYAINSFVGLLDAKGSKPFFMFLDAVKECYE 87
>At4g21570.1 68417.m03120 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 294
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Frame = +3
Query: 495 SIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQS----IYLDSLRECYE 662
+I ++QH+ H+ P QK I+ I+ M PIYA+ + IGL + S ++L+S++ECYE
Sbjct: 28 TIQLVSQHLFHWKNPKEQKAILIIVLMAPIYAVVSFIGLLEVKGSETFFLFLESIKECYE 87
>At1g77220.1 68414.m08994 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 484
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/57 (31%), Positives = 35/57 (61%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
+ ++ I +H+ Y +P QK +I ++ MVP+YA+ + + L E + + +R+CYE
Sbjct: 56 LPMYLIFEHLASYNQPEEQKFLIGLILMVPVYAVESFLSLVNSEAAFNCEVIRDCYE 112
>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 485
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
+S++ + H+ Y P QK +I ++ MVP Y++ + L P S+ LR+CYE
Sbjct: 34 LSLFLVFDHLSTYKNPEEQKFLIGVILMVPCYSIESFASLVKPSISVDCGILRDCYE 90
>At4g38360.1 68417.m05423 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 304
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 492 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYE 662
+S++ + H+ Y P QK +I ++ MVP Y++ + L P S+ LR+CYE
Sbjct: 34 LSLFLVFDHLSTYKNPEEQKFLIGVILMVPCYSIESFASLVKPSISVDCGILRDCYE 90
>At3g27540.1 68416.m03442 glycosyl transferase family 17 protein low
similarity to beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
from Mus musculus [SP|Q10470], Rattus norvegicus
[SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
profile PF04724 :Glycosyltransferase family 17
Length = 390
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 401 YINSTFYKQWVQEIRSGSTRWRWLRAACSAYIYLADNSAHCSLY*AFVTEAHYK 562
Y++S ++ + G TR+ R + + LAD+ HCS +++E +K
Sbjct: 252 YVDSKSWRASIHRYSPGKTRYAHFR---QSNVMLADSGWHCSFCFRYISEFIFK 302
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,662,178
Number of Sequences: 28952
Number of extensions: 236033
Number of successful extensions: 493
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -