Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d21
         (558 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24730 Cluster: Uncharacterized 25.1 kDa protein in PP3...   147   1e-34
UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7; Nucle...    53   5e-06
UniRef50_Q9CCY6 Cluster: Possible membrane transport protein; n=...    33   3.4  
UniRef50_A0YKJ9 Cluster: Putative uncharacterized protein; n=1; ...    33   3.4  
UniRef50_Q5CW22 Cluster: Large protein with a GCN1 domain; n=2; ...    33   4.5  
UniRef50_Q23K90 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q4V0K8 Cluster: Putative uncharacterized protein; n=2; ...    32   7.9  
UniRef50_A3ESW9 Cluster: Uncharacterized conserved protein; n=1;...    32   7.9  
UniRef50_A2QMT3 Cluster: Putative uncharacterized protein; n=1; ...    32   7.9  

>UniRef50_P24730 Cluster: Uncharacterized 25.1 kDa protein in
           PP34-EXO intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 25.1 kDa
           protein in PP34-EXO intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 219

 Score =  147 bits (357), Expect = 1e-34
 Identities = 74/93 (79%), Positives = 75/93 (80%)
 Frame = +1

Query: 268 MSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGES 447
           MSDKTPTKK G HAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQN GES
Sbjct: 1   MSDKTPTKKGGSHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNPGES 60

Query: 448 AVFQXXXXXXXXXXXXXXXQKRLYPILNTPLDN 546
           AVFQ               QKRLYPIL+TPLDN
Sbjct: 61  AVFQELERLENAVVVLENEQKRLYPILDTPLDN 93


>UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Orgyia pseudotsugata multicapsid polyhedrosis virus
           (OpMNPV)
          Length = 297

 Score = 52.8 bits (121), Expect = 5e-06
 Identities = 34/83 (40%), Positives = 43/83 (51%)
 Frame = +2

Query: 2   INTMQQTQRNELNNTNSILTNLASSXXXXXXXXXXXXXXXENLAXXXXXXXXXXXXNFNE 181
           IN++ QT R E+NNTNSILTNLASS               E +                +
Sbjct: 220 INSVAQTLRGEMNNTNSILTNLASSITNINSTLNNLLAAIEGIG--------GDGGGLGD 271

Query: 182 ADRQKLDLVHTLVNDIKNILTGT 250
           ADRQ L+ V +LV +I+NIL GT
Sbjct: 272 ADRQALNEVLSLVTEIRNILMGT 294


>UniRef50_Q9CCY6 Cluster: Possible membrane transport protein; n=5;
           Mycobacterium|Rep: Possible membrane transport protein -
           Mycobacterium leprae
          Length = 618

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 392 SAAIAFLYCCNFSDFFGGFVTPRSRNVMAWPPLFFVGVLSDMLILLSTFP 243
           SA +  +  CN     G +V    +NV AW  ++ + VLS ML +++ FP
Sbjct: 448 SATVFLVLLCNDRPVLGPWVNTARQNVFAWMIVWSLVVLSLMLTVVTLFP 497


>UniRef50_A0YKJ9 Cluster: Putative uncharacterized protein; n=1;
           Lyngbya sp. PCC 8106|Rep: Putative uncharacterized
           protein - Lyngbya sp. PCC 8106
          Length = 1015

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 283 PTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTA 414
           P  KSG   ++  E  V +PP  S K Q++ + I + +T++TT+
Sbjct: 729 PPTKSGLDVISTEETAVIEPPSTSVKHQEFDQKIPSAETVQTTS 772


>UniRef50_Q5CW22 Cluster: Large protein with a GCN1 domain; n=2;
            Cryptosporidium|Rep: Large protein with a GCN1 domain -
            Cryptosporidium parvum Iowa II
          Length = 3395

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 550  LNYQEAYLIWDTIVFVHFLILQPHSLIFPTLEKRHSPRGSAKKK 419
            LN+++A L   ++ FVH + +   SLIFP L K    RG    K
Sbjct: 2023 LNFKKALLSLKSVTFVHAIDITTLSLIFPVLLKTIQERGGTDLK 2066


>UniRef50_Q23K90 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1624

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 223 RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTL 402
           R  KY+  N+D+ I  + KTP+K  G        R      ++ EK+ Q KK +   Q L
Sbjct: 767 RVSKYSRQNLDSSIISARKTPSKSQGPRKSPTPTR-QAYDQQEEEKITQLKKQLQESQDL 825


>UniRef50_Q4V0K8 Cluster: Putative uncharacterized protein; n=2;
           Xanthomonas campestris pv. campestris|Rep: Putative
           uncharacterized protein - Xanthomonas campestris pv.
           campestris (strain 8004)
          Length = 317

 Score = 32.3 bits (70), Expect = 7.9
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 271 SDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNH 438
           S  TP       A T   +G TKPP  +E+LQ+ + ++A          ++SLQNH
Sbjct: 226 SANTPAPPVKSTAATHPAKG-TKPPTAAERLQKIRASLAKMPARARPIKLTSLQNH 280


>UniRef50_A3ESW9 Cluster: Uncharacterized conserved protein; n=1;
           Leptospirillum sp. Group II UBA|Rep: Uncharacterized
           conserved protein - Leptospirillum sp. Group II UBA
          Length = 348

 Score = 32.3 bits (70), Expect = 7.9
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +1

Query: 253 DNKISMSDKTPTKK-SGGHAMTLRERGVTKP--PKKSEK 360
           D K+S+SDK P KK + G+A T +     KP  P++SEK
Sbjct: 262 DAKMSVSDKEPVKKRTSGNAATRKPSAKEKPSSPRRSEK 300


>UniRef50_A2QMT3 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus niger|Rep: Putative uncharacterized protein
           - Aspergillus niger
          Length = 505

 Score = 32.3 bits (70), Expect = 7.9
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 256 NKISMSDKTPTKKSGGHAMTLRERGV-TKPPKKSEKLQQYKKAIAAEQT-LRTTADVSSL 429
           N+   SD+  T    G     +   V T P KK    +++++A A   T +    DVS L
Sbjct: 102 NRPDASDEPITGPVSGKVQISQNGAVPTGPKKKKRSTEEHRQACAQGYTSISPNRDVSLL 161

Query: 430 QNHGESA 450
            NHG SA
Sbjct: 162 WNHGSSA 168


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,579,139
Number of Sequences: 1657284
Number of extensions: 8331577
Number of successful extensions: 25599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25574
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)