Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d21
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.6  
SB_42027| Best HMM Match : CorA (HMM E-Value=0.65)                     28   4.5  
SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)                   28   4.5  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           28   5.9  
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)                   27   7.9  
SB_16446| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +1

Query: 247 NVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSS 426
           + D+ I  S K    +      T     V  PPKK +K ++ KK     +     AD+S+
Sbjct: 342 DADSTIGKSAKKRKHEKSDEEETAATPEVESPPKKHKKEKKSKKEKTKTEESDEEADISA 401

Query: 427 LQNHGE 444
           +  +GE
Sbjct: 402 VLENGE 407


>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 547 NYQEAYLIWDTIVFVHFLILQPHSLIFPTLEKRHSPRGSAKKKHLL 410
           NY+EAY I +   FVH        + F  L   H PR  +K   +L
Sbjct: 351 NYKEAYKILEEAAFVHNYTKAQEMVAFSYLFGDHLPRNFSKAYEVL 396


>SB_42027| Best HMM Match : CorA (HMM E-Value=0.65)
          Length = 369

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 390 GSDSFLVLLQLFRLFWGFCYAAL 322
           GS   ++L+ +F +FWG C+  L
Sbjct: 314 GSTLMMILILIFGMFWGACFGIL 336


>SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)
          Length = 167

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 1   DQHDAANAAQRVEQHQLYFDQFSVEHHKHQWYAQQFADRYRK 126
           DQ      + R+ +HQ +  ++S   +KHQ +  ++++R  K
Sbjct: 24  DQKHITEYSNRIYKHQKHITEYSNRIYKHQKHLTEYSNRIYK 65


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 268  MSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGES 447
            M ++ PTK  G      +     +P +  ++ +   K +   QTL +T+DV     HGE+
Sbjct: 1583 MIERKPTKVVGTSKDAPKSTENNEPHQGVDQFEDILKWLDEGQTLESTSDVDRQAFHGEN 1642


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 336 CYAALS*RHGMAAAFFCRRFV-GHAYFVVNVPVSIF 232
           C AAL  RH M    F  RFV   A F+V++P  +F
Sbjct: 680 CSAALHRRHLMVWKIFAPRFVFESASFLVSIPFLVF 715


>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
          Length = 711

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 381 YRCRANAAHHSRCFFFAEPRGECRFSRVGK 470
           YR R+    H  C F  +    C F ++GK
Sbjct: 614 YRLRSRRLRHLTCCFIEDVTSSCAFVQIGK 643


>SB_16446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1598

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 244 GNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEK 360
           G  D  +     T   +SG     ++ +GVTKPP++ +K
Sbjct: 523 GQKDTGLHYKGMTKPPQSGQKDTGMQYKGVTKPPQRGQK 561



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 241 HGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEK 360
           +G  D  +     T   + G     L  +G+TKPP+K +K
Sbjct: 630 NGQKDTGLHYKGMTKPPQKGQKDTVLHYKGMTKPPQKGQK 669


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,333,656
Number of Sequences: 59808
Number of extensions: 284549
Number of successful extensions: 999
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)