Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d21
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62600.1 68418.m07856 transportin-SR-related contains weak si...    30   1.2  
At2g41760.1 68415.m05162 expressed protein                             29   1.6  
At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3) i...    29   1.6  
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,...    29   2.1  
At1g30840.1 68414.m03771 purine permease-related low similarity ...    27   6.4  
At1g58200.2 68414.m06607 mechanosensitive ion channel domain-con...    27   8.5  
At1g58200.1 68414.m06606 mechanosensitive ion channel domain-con...    27   8.5  

>At5g62600.1 68418.m07856 transportin-SR-related contains weak
           similarity to transportin-SR (GI:5052414) [Homo sapiens]
          Length = 958

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 289 LSAFCRTCLFCCQRSREYIFDIVNQSVHEVQF 194
           + + CR C +  + S  YI D + + + ++QF
Sbjct: 675 MESLCRACKYAVRTSGRYIIDTIGEMLEKIQF 706


>At2g41760.1 68415.m05162 expressed protein
          Length = 221

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -2

Query: 443 SPWFCKEETSAVVRSVCSAAIAFLYCCNFSDFFGGFVTPRSRNVMAW 303
           +P++C+E    + +++C   +A   C   SD F  F++   + V  W
Sbjct: 19  TPYYCEENVYLLCKTLCENGVAEATC---SDLFVVFISNEKKQVPLW 62


>At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3)
           identical to SUVH3 [Arabidopsis thaliana] GI:13517747;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH3 (SUVH3) GI:14625477
          Length = 669

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 271 SDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTL 402
           S +TPTK +G  + +  +RGV +P   +   ++ KK +A E  L
Sbjct: 91  SYRTPTKTNGPSSSSGTKRGVGRPKGTTSVKKKEKKTVANEPNL 134


>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
           putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
           amidohydrolase) {Canavalia ensiformis}; contains Pfam
           profile PF01979: Amidohydrolase family
          Length = 838

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = -2

Query: 449 ALSPWFCKEETSAVVRSVCSAAIAFLYCCNFSDFFGGFVTPRSRNVMAWPPLFFVGVLSD 270
           A+ P    ++ S + R +    I       F+D  G     +  +++ W P FF G   +
Sbjct: 658 AIDPNMADDDNSRIKRYIAKYTINPAIANGFADLIGSVEVKKLADLVIWQPAFF-GAKPE 716

Query: 269 MLI 261
           M+I
Sbjct: 717 MII 719


>At1g30840.1 68414.m03771 purine permease-related low similarity to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profiles PF03151: Domain of unknown
           function, DUF250, PF00892: Integral membrane protein
          Length = 382

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 111 SKLLSVPLMFVMLDAKLVKIELVLFNSLRCVCCIVL 4
           S LLS  L+F ++ ++++  + + F++L CV  + L
Sbjct: 128 SLLLSTQLVFTLILSRIIVKQKITFSNLNCVVLLTL 163


>At1g58200.2 68414.m06607 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 678

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 343 PKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGES 447
           P K+EK +        EQTL++ A   S +N+GES
Sbjct: 590 PHKAEKDEVSDDEATIEQTLKSKAKQGSEKNNGES 624


>At1g58200.1 68414.m06606 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 678

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 343 PKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGES 447
           P K+EK +        EQTL++ A   S +N+GES
Sbjct: 590 PHKAEKDEVSDDEATIEQTLKSKAKQGSEKNNGES 624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,453,943
Number of Sequences: 28952
Number of extensions: 187117
Number of successful extensions: 589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)