Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8d19
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 219 3e-58
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 210 2e-55
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 209 3e-55
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 181 1e-46
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 151 8e-38
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 85 1e-17
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 76 6e-15
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 48 1e-06
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 6.4
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 25 8.4
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 219 bits (536), Expect = 3e-58
Identities = 104/148 (70%), Positives = 122/148 (82%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
GTVIGIDLGTTYSCV V KNGRVEIIANDQGNRITPSYVAFT+D ERL+G+AAKNQ +N
Sbjct: 35 GTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTED-ERLVGEAAKNQAPSN 93
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAM 606
PENT+FD KRLIGR++ ++T+ D+K FPF +V ++P V+V K F PEEISAM
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 607 VLTKMKETAEAYLGKKVTHAVVTVPCLF 690
+L+KMK+TAEAYLGK VTHAVVTVP F
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYF 181
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +2
Query: 680 PAYFNDAQRQATKDAGT 730
PAYFNDAQRQATKDAGT
Sbjct: 178 PAYFNDAQRQATKDAGT 194
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 210 bits (512), Expect = 2e-55
Identities = 103/145 (71%), Positives = 116/145 (80%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
T+FDAKRLIGR++ D VQ D+K +PFKV+ K+ KP +QV+ K F PEEIS+MVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 616 KMKETAEAYLGKKVTHAVVTVPCLF 690
KM+ETAEAYLG KVT AVVTVP F
Sbjct: 124 KMRETAEAYLGGKVTDAVVTVPAYF 148
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 680 PAYFNDAQRQATKDAG 727
PAYFND+QRQATKDAG
Sbjct: 145 PAYFNDSQRQATKDAG 160
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 209 bits (511), Expect = 3e-55
Identities = 102/145 (70%), Positives = 117/145 (80%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
T+FDAKRLIGR ++D VQ D+K +PFKV+EK+ KP +QV+ K F PEEIS+MVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 616 KMKETAEAYLGKKVTHAVVTVPCLF 690
KM+E+AEA+LG KVT AVVTVP F
Sbjct: 124 KMRESAEAFLGGKVTDAVVTVPAYF 148
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 680 PAYFNDAQRQATKDAG 727
PAYFND+QRQATKDAG
Sbjct: 145 PAYFNDSQRQATKDAG 160
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 181 bits (440), Expect = 1e-46
Identities = 89/145 (61%), Positives = 105/145 (72%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCV V++ VEII NDQG R TPS+VAFT+ ERL+GDAAKNQ NP N
Sbjct: 9 IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTET-ERLVGDAAKNQAAMNPRN 67
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
TVFDAKRLIGR + D Q D+K +PFKV++ N P ++V K F +EISAMVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 616 KMKETAEAYLGKKVTHAVVTVPCLF 690
KMKE +EA L K+V AV+TVP F
Sbjct: 128 KMKEISEAKLNKRVEKAVITVPAYF 152
Score = 32.7 bits (71), Expect = 0.056
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 680 PAYFNDAQRQATKDAG 727
PAYF+D+QR ATKDAG
Sbjct: 149 PAYFSDSQRAATKDAG 164
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 151 bits (367), Expect = 8e-38
Identities = 76/148 (51%), Positives = 102/148 (68%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
G VIGIDLGTT SC+ + + ++IAN +G R TPS VAFT+DGERL+G +AK Q N
Sbjct: 50 GPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVIN 109
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAM 606
PENT F KRLIGR + + VQ D+K P+K+VE +S ++ ++G K ++P +I
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVE-HSNGDAWLE-ARG-KTYSPSQIGGF 166
Query: 607 VLTKMKETAEAYLGKKVTHAVVTVPCLF 690
+L+KM+ETA YLGK V +AVVTVP F
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAYF 194
Score = 33.9 bits (74), Expect = 0.024
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 680 PAYFNDAQRQATKDAG 727
PAYFND+QRQATK AG
Sbjct: 191 PAYFNDSQRQATKAAG 206
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 85.0 bits (201), Expect = 1e-17
Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Frame = +1
Query: 253 VIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPE 432
V+GID G + + + V +N +++I N+ NR TPS V++ + R +G+AAK+ +N
Sbjct: 7 VVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSY-GERSRFLGEAAKSAEASNFR 65
Query: 433 NTVFDAKRLIGREWSDQTVQH-DVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMV 609
NTV KRL GR + D ++ + F K+ E + +VQ + F+ ++ A
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 610 LTKMKETAEAYLGKKVTHAVVTVPCLF 690
TK+K AEA L V+ V+++P F
Sbjct: 126 FTKIKAIAEAELIGSVSDVVISIPAWF 152
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 75.8 bits (178), Expect = 6e-15
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Frame = +1
Query: 250 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNP 429
TVIGI G S + ++G+ +++AN++GNR PS +++ D E G A+ QL N
Sbjct: 25 TVIGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQE-YHGVQARGQLVRNA 83
Query: 430 ENTVFDAKRLIGREWSDQTVQH-DVKFFPFKVV-EKNSKPHVQ--VQTSQGDKVFAPEEI 597
+N+V + + L+G+ + T+ H P V + K VQ ++ +K+ E
Sbjct: 84 DNSVTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEA 143
Query: 598 SAMVLTKMKETAEAYLGKKVTHAVVTVPCLF 690
S L ++ E+AE +LG KV V++VP F
Sbjct: 144 SVRHLRRLTESAEDFLGTKVNGCVMSVPVYF 174
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 48.0 bits (109), Expect = 1e-06
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Frame = +1
Query: 250 TVIGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
+V+ ID GT ++ + K G +EI+ R S VAF + ER+ G A N T
Sbjct: 23 SVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAF-KGNERIFGVDASNLATRF 81
Query: 427 PENTVFDAKRLIGREWSDQT-VQHDVKFFPFKVVEKNSKPHVQVQTSQGDKV-FAPEEIS 600
P +++ + K L+ + VQ +P + +N + + D+ ++ EEI
Sbjct: 82 PAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEII 141
Query: 601 AMVLTKMKETAEAYLGKKVTHAVVTVP 681
AM + AE +K+T V+TVP
Sbjct: 142 AMTMEHYISLAEEMAHEKITDLVLTVP 168
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 371 VKATYEGVMRLPWS 330
+K TYEG +R PWS
Sbjct: 284 MKLTYEGELRAPWS 297
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 379 GERLIGDAAKNQLTTNPENT 438
GE ++ D+ N TNP+NT
Sbjct: 6 GENIVSDSIVNMELTNPDNT 25
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,481
Number of Sequences: 5004
Number of extensions: 56485
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -