Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d18
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   1.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   1.0  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   1.8  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   2.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   3.1  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    24   5.5  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    23   7.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   7.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    23   7.3  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    23   9.6  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    23   9.6  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    23   9.6  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    23   9.6  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 91  VNLRSNSALKDLNCNSNATQLRLHVSCW 8
           +  R+  A +   C SN T+  LH  CW
Sbjct: 233 IEQRNEDAWRCPYCQSNQTETSLHYLCW 260


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 67  LKDLNCNSNATQLRLHVSCW 8
           +K+L+C +   QL L++ CW
Sbjct: 327 MKNLDCETQVRQLALYLLCW 346


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 6   VQHETCRRS*VALELQFKSFKAELLLRFTNRASLIAP*LILVCV 137
           ++ ET R+   A E Q  SFK  + +  T   +L+    ILVC+
Sbjct: 293 IRKETGRQVFTAQEKQMLSFKEIVQVNLTRPLTLLLTEPILVCI 336


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 299 FFLIEIIYSIAHTISTIQFYF--IFKTQYLNILWND*VSNDSTKFLIVYCFFFFLSYAN 129
           FF++  + + ++  S + F         Y N+ W   +   ST FL +Y F+ F+ Y N
Sbjct: 213 FFVLASVGNTSYAFSILVFPASDYLNYTYANLPWI--LGAFSTIFLDIYIFYQFIKYRN 269


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -3

Query: 227 TQYL--NILWND*VSNDSTKFLIVY-CFFFFL 141
           T+YL  N L    ++N S KFL +Y CFF+ L
Sbjct: 794 TEYLKINTLSMKSLNNSSRKFLELYQCFFYVL 825


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 1   LPSSMRHAGEAELHWNYSLNPSRRNCFLDSQIEHP*LL 114
           LPSS+  A +  LH    +NPS R   +     HP L+
Sbjct: 223 LPSSISSAAQDLLHRMLDVNPSTR-ITIPEVFSHPFLM 259


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 70  RNCFLDSQIEHP*LLRN*SLFAYERKKKKQYTIKNFVES 186
           R  F+++ I H   LRN ++  + +KK +   +  F E+
Sbjct: 271 RKFFVETNIVHGQKLRNINVVGWVKKKTRDIVLSPFHEN 309


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/18 (44%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
 Frame = -3

Query: 173 FLIVYCFFFF--LSYANK 126
           F+++YCF FF  ++Y +K
Sbjct: 737 FVVIYCFTFFAPMTYGDK 754


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 131  LRMKEKKKNNIQLKTLSNHLILNHSKE 211
            LRM E +K+NIQ K L++   L    E
Sbjct: 959  LRMAELEKSNIQQKYLASEKTLEMMNE 985


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   LPSSMRHAGEAELHWNYSLNPSRRNCFLDSQI 96
           LPS+   A  + L+ N S +PS+   FL S I
Sbjct: 267 LPSTTSDAPSSLLNTNVSSSPSKFRKFLSSVI 298


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 257 STIQFYFIFKTQYLNILW 204
           S + F  ++ T+YLN+ W
Sbjct: 36  SHLLFLLVYVTRYLNLFW 53


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 103 DARFVNLRSNSALKDLNCNSNATQLR 26
           D    N+ SNS + DLN  +   +LR
Sbjct: 249 DQSMTNISSNSTVSDLNLKTLKKRLR 274


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 109 IKDARFVNLRSNSALKDLNCNSNATQLRLHVSCW 8
           + D+  + ++ NSA    N +SN       + CW
Sbjct: 425 LTDSMSIEVQGNSAAALGNLSSNVDDYSRFIECW 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,279
Number of Sequences: 5004
Number of extensions: 20155
Number of successful extensions: 45
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)