Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d18
         (301 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636...    27   2.1  
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779...    27   3.6  
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068...    26   6.3  
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970...    26   6.3  
01_06_0531 + 30041486-30041770,30042029-30042964                       26   6.3  

>06_01_0838 -
           6360232-6360460,6360571-6360719,6360825-6360933,
           6361446-6362276,6362865-6362969,6363084-6363180,
           6363303-6363341,6363435-6363477
          Length = 533

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
 Frame = -1

Query: 103 DARFVNLRSNSALKDLNC-------NSNATQLRLHVSCW 8
           D  ++N R+      LNC       N+NATQ R+ V+ W
Sbjct: 28  DINYINQRARLKSASLNCVGSPPRKNNNATQYRMFVATW 66


>03_02_0359 -
           7788382-7788522,7788931-7789837,7791227-7791337,
           7791437-7791507,7791582-7791659,7792564-7792770,
           7792867-7793046,7793249-7793471,7794133-7794453,
           7794538-7795109
          Length = 936

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -1

Query: 118 YGAIKDARF-VNLRSNSALKDLNCNS-NATQLRLHVSCW 8
           YG I   +F V LRS   ++D  CNS   T L +    W
Sbjct: 166 YGLINFLKFFVQLRSTLNIRDFYCNSLKITDLEIQTISW 204


>05_06_0133 +
           25905455-25905545,25905650-25906202,25906310-25906806,
           25906905-25907043,25907182-25907253,25907344-25907415,
           25907503-25907583,25907899-25908065,25908148-25908416,
           25908512-25908638,25908752-25908820,25908928-25909120,
           25909215-25909707
          Length = 940

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 300 FFFNRNNLFNSTYNIYNT 247
           F+   NN  NS+YN+YNT
Sbjct: 894 FYAGNNNDPNSSYNMYNT 911


>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
            28797173-28797234,28797316-28797460,28797542-28797961,
            28798041-28798090,28798163-28798349,28798426-28798680,
            28798785-28798953,28799044-28799177,28799291-28799446,
            28799534-28799719,28799798-28799962,28800074-28800190,
            28800553-28800762,28800850-28801049,28801135-28801405,
            28801481-28801547,28801644-28801942,28802425-28802991
          Length = 1487

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 139  ERKKKKQYTIKNFVESFDT*SFQRMFKY*VLKIK*NCIVDIVCAIE 276
            + K+KK+  I+ F+E+FDT S  +  ++ +   K N  + +   +E
Sbjct: 918  KEKEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLE 963


>01_06_0531 + 30041486-30041770,30042029-30042964
          Length = 406

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 109 IKDARFVNLRSNSALKDLNCNS 44
           +KDAR  NLR N  +K  N +S
Sbjct: 152 LKDARVANLRENGVVKHQNYSS 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,553,261
Number of Sequences: 37544
Number of extensions: 99781
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)