Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d18
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_49944| Best HMM Match : PKD_channel (HMM E-Value=0.75)              25   8.6  
SB_38734| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_54039| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 70  ALKDLNCNSNATQLRLHVSC 11
           ALK L CN +A Q R H  C
Sbjct: 398 ALKTLKCNRSAVQRREHTGC 417


>SB_49944| Best HMM Match : PKD_channel (HMM E-Value=0.75)
          Length = 211

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 299 FFLIEIIYSIAHTISTIQFYFIFKTQYLNILWN 201
           F L+ I++ I  T S ++  F  K +YL   WN
Sbjct: 164 FELVYIVFLITFTYSEVKQMFHQKKKYLKDPWN 196


>SB_38734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 269 AHTISTIQFYFIFKTQYLNILW 204
           AHT+   ++  IFK +Y+++LW
Sbjct: 75  AHTLPQQRWQQIFKHEYVSLLW 96


>SB_54039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 104 LNCSVINPCLRMKEKKKNNI 163
           L CS++NP   ++EK KN I
Sbjct: 54  LKCSLLNPLNSIREKFKNGI 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,106,595
Number of Sequences: 59808
Number of extensions: 133852
Number of successful extensions: 243
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)