Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d18
         (301 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1290|AAF52523.2|  549|Drosophila melanogaster CG6441-PA...    27   4.4  
AY089311-1|AAL90049.1|  440|Drosophila melanogaster AT11329p pro...    26   7.7  
AE014134-1291|AAN10633.1|  431|Drosophila melanogaster CG6441-PB...    26   7.7  

>AE014134-1290|AAF52523.2|  549|Drosophila melanogaster CG6441-PA,
           isoform A protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 131 LRMKEKKKNNIQLKTLSNHLILNHSKECL 217
           L M    K + Q++ L  + ++NHSK+CL
Sbjct: 117 LSMTFTTKEHDQMQPLDRNTLVNHSKQCL 145


>AY089311-1|AAL90049.1|  440|Drosophila melanogaster AT11329p
           protein.
          Length = 440

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 152 KNNIQLKTLSNHLILNHSKECL 217
           K + Q++ L  + ++NHSK+CL
Sbjct: 6   KEHDQMQPLDRNTLVNHSKQCL 27


>AE014134-1291|AAN10633.1|  431|Drosophila melanogaster CG6441-PB,
           isoform B protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 152 KNNIQLKTLSNHLILNHSKECL 217
           K + Q++ L  + ++NHSK+CL
Sbjct: 6   KEHDQMQPLDRNTLVNHSKQCL 27


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,627,696
Number of Sequences: 53049
Number of extensions: 188539
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 549010566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)