Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d18
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78537-4|CAB01721.1|  569|Caenorhabditis elegans Hypothetical pr...    27   1.9  
Z68014-14|CAA92030.1|  569|Caenorhabditis elegans Hypothetical p...    27   1.9  
AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical ...    27   3.3  
Z77660-2|CAB01176.1|  361|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical...    26   5.8  

>Z78537-4|CAB01721.1|  569|Caenorhabditis elegans Hypothetical
           protein W04G3.8 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 28  EAELHWNYSLNPSRRNCFLDSQIEH 102
           +A+  W Y L P  +N F DSQ E+
Sbjct: 476 DAQPFWIYKLGPEGKNSFGDSQYEY 500


>Z68014-14|CAA92030.1|  569|Caenorhabditis elegans Hypothetical
           protein W04G3.8 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 28  EAELHWNYSLNPSRRNCFLDSQIEH 102
           +A+  W Y L P  +N F DSQ E+
Sbjct: 476 DAQPFWIYKLGPEGKNSFGDSQYEY 500


>AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical
           protein F34D6.4 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 296 FLIEIIYSIAHTISTIQFYFIFKTQYLNILWND*VSNDSTKFLIVYCFFFFLSY 135
           FL+ + Y +    S I F F F   Y+  ++   V +  T  +  + FFF L++
Sbjct: 29  FLLRVTYQLLRP-SQISFLFFFSIFYVFKMYVQNVKDHITFAVFFWKFFFILAF 81


>Z77660-2|CAB01176.1|  361|Caenorhabditis elegans Hypothetical
           protein F38H4.2 protein.
          Length = 361

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 89  HKSSILNCSVINPCLRMKEKKKNNIQLKTLSNHLILNHSKECLNTES 229
           HK  I N + +NP L    K   N  L   S+H+ L  ++  LN +S
Sbjct: 210 HKILIQNFNYLNPNLPSTGKMTLNELLLINSSHITLTFNEMALNEKS 256


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical
           protein T28B8.3a protein.
          Length = 1838

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 95  SSILN-CSVINPCLRMKEKKKNNI 163
           +S++N CS+   CLR+ EK K++I
Sbjct: 912 TSLINICSIAKTCLRVFEKPKDDI 935


>AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1A.17 protein.
          Length = 385

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 101 ILNC-SVINPCLRMKEKKKNNIQLKTLSNHLI 193
           +LNC   +NP      K  NN+ L+ L NH I
Sbjct: 279 LLNCLETVNPLHEKLWKSSNNVILEFLLNHSI 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,345,644
Number of Sequences: 27780
Number of extensions: 111499
Number of successful extensions: 268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)