Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8d18
(301 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 25 0.15
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 24 0.35
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 24 0.46
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 22 1.4
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 22 1.9
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 21 2.5
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 21 2.5
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 2.5
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 20 5.7
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 20 5.7
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 20 5.7
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 20 5.7
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 20 5.7
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 20 5.7
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 20 5.7
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 20 5.7
AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein. 20 5.7
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 20 7.6
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 20 7.6
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 20 7.6
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 20 7.6
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 25.4 bits (53), Expect = 0.15
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 291 NRNNLFNSTYNIYNTVLFY 235
N NN N+ YN YN L+Y
Sbjct: 329 NYNNYNNNNYNNYNKKLYY 347
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 24.2 bits (50), Expect = 0.35
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 297 FFNRNNLFNSTYNIYNTVLFY 235
+ N NN +N+ YN YN L+Y
Sbjct: 91 YSNYNN-YNNNYNNYNKKLYY 110
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.8 bits (49), Expect = 0.46
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 294 FNRNNLFNSTYNIYNTVLFY 235
+N NN +N N YN L+Y
Sbjct: 98 YNYNNKYNYNNNNYNKKLYY 117
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 22.2 bits (45), Expect = 1.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 294 FNRNNLFNSTYNIYNTVLFY 235
+N NN + YN YN L+Y
Sbjct: 324 YNNNN-YKYNYNNYNKKLYY 342
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 21.8 bits (44), Expect = 1.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 291 NRNNLFNSTYNIYN 250
N NN N+ YN YN
Sbjct: 92 NNNNYNNNNYNNYN 105
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 21.4 bits (43), Expect = 2.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 248 QFYFIFKTQYLNILWND*VSND 183
+FYF Q LN + + +SND
Sbjct: 256 EFYFFLHKQVLNRYYLERLSND 277
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 21.4 bits (43), Expect = 2.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 248 QFYFIFKTQYLNILWND*VSND 183
+FYF Q LN + + +SND
Sbjct: 256 EFYFFLHKQVLNRYYLERLSND 277
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.4 bits (43), Expect = 2.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 294 FNRNNLFNSTYNIYN 250
+N NN +N+ YN YN
Sbjct: 329 YNNNN-YNNNYNNYN 342
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.2 bits (40), Expect = 5.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -2
Query: 291 NRNNLFNSTYNIYNTVLFY 235
N N +N N YN L+Y
Sbjct: 92 NNNYKYNYNNNNYNKKLYY 110
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.2 bits (40), Expect = 5.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -2
Query: 291 NRNNLFNSTYNIYNTVLFY 235
N N +N N YN L+Y
Sbjct: 92 NNNYKYNYNNNNYNKKLYY 110
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.2 bits (40), Expect = 5.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -2
Query: 291 NRNNLFNSTYNIYNTVLFY 235
N N +N N YN L+Y
Sbjct: 92 NNNYKYNYNNNNYNKKLYY 110
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.2 bits (40), Expect = 5.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -2
Query: 291 NRNNLFNSTYNIYNTVLFY 235
N N +N N YN L+Y
Sbjct: 92 NNNYKYNYNNNNYNKKLYY 110
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 5.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -2
Query: 291 NRNNLFNSTYNIYNTVLF 238
N NN N+ YN Y + +
Sbjct: 92 NNNNYNNNNYNNYKKLYY 109
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 20.2 bits (40), Expect = 5.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 125 PCLRMKEKKKNNIQLKTLS 181
PCL + K +NN + LS
Sbjct: 627 PCLLPRPKSENNFASQELS 645
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 20.2 bits (40), Expect = 5.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 125 PCLRMKEKKKNNIQLKTLS 181
PCL + K +NN + LS
Sbjct: 595 PCLLPRPKSENNFASQELS 613
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 20.2 bits (40), Expect = 5.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 100 ARFVNLRSNSALKDLNCNSNAT 35
++ VN R+N+ + + NSN T
Sbjct: 519 SKLVNKRNNAKIYTSSVNSNLT 540
>AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein.
Length = 388
Score = 20.2 bits (40), Expect = 5.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 296 FLIEIIYSIAHTISTIQFYFIFKTQYLNILWN 201
FL E S H + FYF+ ++ +LW+
Sbjct: 86 FLDEDYSSAEHFTALGNFYFVHESLKNVLLWD 117
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 19.8 bits (39), Expect = 7.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 297 FFNRNNLFNSTYNIYNT 247
F N+NNL S Y+T
Sbjct: 397 FQNKNNLIPSALQSYST 413
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 19.8 bits (39), Expect = 7.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 297 FFNRNNLFNSTYNIYNT 247
F N+NNL S Y+T
Sbjct: 397 FQNKNNLIPSALQSYST 413
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 19.8 bits (39), Expect = 7.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 4 PSSMRHAGEAELHWNYSLNPS 66
PSSM+ E + SL+PS
Sbjct: 531 PSSMKETEEEKKKTKQSLSPS 551
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 19.8 bits (39), Expect = 7.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 297 FFNRNNLFNSTYNIYN 250
+ N NN +N+ YN YN
Sbjct: 324 YSNYNN-YNNNYNNYN 338
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,367
Number of Sequences: 438
Number of extensions: 1540
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 6244050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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