Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d18
         (301 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27970.1 68418.m03369 expressed protein                             27   3.1  
At4g25870.1 68417.m03720 expressed protein contains Pfam profile...    26   5.4  
At3g58890.1 68416.m06563 syntaxin-related family protein contain...    26   5.4  
At3g32330.1 68416.m04125 DNA repair protein-related weak similar...    26   5.4  
At2g22870.1 68415.m02715 expressed protein                             26   5.4  
At1g02360.1 68414.m00182 chitinase, putative similar to chitinas...    26   5.4  
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof...    25   7.1  
At1g33811.1 68414.m04180 GDSL-motif lipase/hydrolase family prot...    25   7.1  

>At5g27970.1 68418.m03369 expressed protein
          Length = 1629

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 125 PCLRMKEKKKNNIQLKTLSNHLILNHSKECLNTE 226
           P L+  E  + NIQLKTL   LI+  S+    TE
Sbjct: 107 PYLQHSEMAEENIQLKTLQTILIIFQSRLHPETE 140


>At4g25870.1 68417.m03720 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 389

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 34  ELHWNYSLNPSRRNCFLDSQIEHP 105
           ELHW  + N  +R C+L ++  HP
Sbjct: 348 ELHWPCTWNGIKRPCYLFARKFHP 371


>At3g58890.1 68416.m06563 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins
           At3g59270,At1g56610, At3g54160, At1g47920 (syntaxin
           SYP81),, At5g41830, At3g44180,  At1g48390 [Arabidopsis
           thaliana]
          Length = 293

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 236 IFKTQYLNILWND*VSNDSTKFLIVYC 156
           I K +++   W++ VS+ S + L++YC
Sbjct: 30  IIKAKWIGSEWDETVSSASLRKLVIYC 56


>At3g32330.1 68416.m04125 DNA repair protein-related weak similarity
           to SP|P41410 DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}
          Length = 327

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 164 QLKTLSNHLILNHSKECL 217
           +LK L+N +I NH  ECL
Sbjct: 240 ELKMLTNKVIYNHKGECL 257


>At2g22870.1 68415.m02715 expressed protein
          Length = 300

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 86  IHKSSILNCSVINPCLRMKEKKKNNIQLKTLSNHLILNHS 205
           + KSS++NC V    + +  KK    Q   L NH ++N S
Sbjct: 131 VGKSSLINCLVRKKEVALTSKKPGKTQ---LINHFLVNKS 167


>At1g02360.1 68414.m00182 chitinase, putative similar to chitinase
           precursor GI:5880845 from [Petroselinum crispum]
          Length = 272

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 25  GEAELHWNYSLNPSRRNCFLDSQIEHP*LLRN*SLFAYE 141
           G  +L WNY+  P+ R    D  + +P  + N S+ A++
Sbjct: 144 GPIQLSWNYNYGPAGRALGFDG-LRNPETVSNNSVIAFQ 181


>At4g38870.1 68417.m05504 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 426

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 91  VNLRSNSALKDLNCNSNATQLRLHVSCWT 5
           V+L+S   +   + +S+A+ +  HV+C+T
Sbjct: 120 VHLKSTREISSSSSSSSASSITYHVTCYT 148


>At1g33811.1 68414.m04180 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 370

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 127 RINYGAIKDARFVNLRSNSALKDLNCNSNA 38
           R+N G +K A+FV L S  +  DL  N  A
Sbjct: 268 RLNKGQLKGAKFVYLDSYKSTYDLAVNGAA 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,694,724
Number of Sequences: 28952
Number of extensions: 92626
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)