Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d17
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    87   2e-18
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    82   4e-17
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.33 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   3.1  
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    26   4.1  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   7.2  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   7.2  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   7.2  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   9.5  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 41/59 (69%), Positives = 48/59 (81%)
 Frame = +1

Query: 103 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 279
           AP    +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLR
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLR 66


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 38/55 (69%), Positives = 45/55 (81%)
 Frame = +1

Query: 115 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 279
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLR
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLR 58


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 127 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 252
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +1

Query: 103 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 276
           APK +  KK  KT++  + +  ++        G K+ +K +R+G+  LVI+A +  P+
Sbjct: 33  APKKLN-KKMMKTVKKASKQKHILR-------GVKEVVKAVRKGEKGLVILAGDISPM 82


>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 221 LFDKAKQSWLSSLKMLLR*GEATEK*SFPILV--KGMHMESY*QRSMDSLCGLVKQFAK 391
           +FD +++S L+S+K   R      K + PIL+  K  H  ++ +   + +    +++AK
Sbjct: 89  MFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYDHFMTFPREDQEEITKQARRYAK 147


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 126 LCCNHFGSVNANESSPRAQMEK 61
           + C+H  S+NAN S+ RA M +
Sbjct: 146 VACDHEFSINANVSAARALMNR 167


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 249 YHR*KCSSAKVRLLRSRVSQYLSKGCIWSLTDKEVWIPFVV**NSSQK*G 398
           Y    CSS   ++L S +S+ L +  +W    K      V+   SSQ  G
Sbjct: 507 YRMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMNSAVLRRQSSQSSG 556


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 37  SLRYYWPLLFHLCSW*GFISIYAPKMVAAKKQKKTIE 147
           +++ +W   FH+C W G+ +++   +V  K+  K  E
Sbjct: 329 AMQQHWTFGFHICRW-GYKNVF--DLVEVKENFKNFE 362


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 53  GRFFSICALGEDSLAFTLPKWLQQRNRKRPSSQLTPAL 166
           G+  ++  L ++ L ++L +WL   N K PS+Q +  L
Sbjct: 117 GKSTAVQVLAKE-LGYSLIEWLNPMNLKEPSNQESDTL 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,067
Number of Sequences: 5004
Number of extensions: 43259
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)