Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d17
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi...    84   5e-17
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi...    82   2e-16
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi...    79   1e-15
At3g45940.1 68416.m04971 alpha-xylosidase, putative strong simil...    33   0.16 
At3g02300.1 68416.m00212 regulator of chromosome condensation (R...    28   3.5  
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot...    28   4.6  
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot...    27   6.1  

>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
           to GI:6984132 from [Euphorbia esula]
          Length = 112

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 40/56 (71%), Positives = 45/56 (80%)
 Frame = +1

Query: 112 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 279
           MVAAKK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLR 56


>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
           to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
           luteus]
          Length = 112

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 39/56 (69%), Positives = 44/56 (78%)
 Frame = +1

Query: 112 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 279
           MVA KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLR 56


>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
           to ribosomal protein L30 GI:388034 from [Homo sapiens]
          Length = 112

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 38/56 (67%), Positives = 43/56 (76%)
 Frame = +1

Query: 112 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 279
           MV  KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLR 56


>At3g45940.1 68416.m04971 alpha-xylosidase, putative strong
           similarity to alpha-xylosidase precursor GI:4163997 from
           [Arabidopsis thaliana]
          Length = 868

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = +1

Query: 49  YWPLLFHLCSW*GFISIYAPKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQ-TLKTL 225
           YW L FH C W G+ ++   K V    QK  I      L ++     Y  GYK  TL  +
Sbjct: 287 YWSLGFHQCRW-GYRNVSVVKDVVDNYQKAKIP-----LDVIWNDADYMDGYKDFTLDLV 340

Query: 226 RQGKAKLVIIAKNAPPLR*GY*EVEFPNTCQRDAYGV 336
               AKL+        +   Y  ++ P      +YGV
Sbjct: 341 NFPHAKLLSFLDRIHKMGMKYVVIKDPGIGVNASYGV 377


>At3g02300.1 68416.m00212 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 471

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 142 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 273
           I  +   +++  KS  Y  GY Q+ +T R  + KL+ I K  PP
Sbjct: 7   IGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPP 50


>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 435

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 181 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 264
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 298 TGKYVFGVEDTLKALEMGAVETLIVWEN 325


>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 434

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 181 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 264
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 297 TGKYVFGVEDTLKALEMGAIETLIVWEN 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,110,558
Number of Sequences: 28952
Number of extensions: 214953
Number of successful extensions: 431
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)