Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d13
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   9.1  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   9.1  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   9.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.1  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 426 GQRRFAHVGYQAAV 467
           G+RRF+H   Q A+
Sbjct: 101 GERRFSHKALQGAI 114


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 426 GQRRFAHVGYQAAV 467
           G+RRF+H   Q A+
Sbjct: 261 GERRFSHKALQGAI 274


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 426 GQRRFAHVGYQAAV 467
           G+RRF+H   Q A+
Sbjct: 261 GERRFSHKALQGAI 274


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 542 PRPSLSRKHSSLSLPQRSINSSPTS 468
           P P +++K +S+S+   +  +SP S
Sbjct: 175 PSPRITKKANSVSVKVENRRNSPNS 199


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 542 PRPSLSRKHSSLSLPQRSINSSPTS 468
           P P +++K +S+S+   +  +SP S
Sbjct: 123 PSPRITKKANSVSVKVENRRNSPNS 147


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 542 PRPSLSRKHSSLSLPQRSINSSPTS 468
           P P +++K +S+S+   +  +SP S
Sbjct: 306 PSPRITKKANSVSVKVENRRNSPNS 330


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,447
Number of Sequences: 336
Number of extensions: 3337
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)