Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d12
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   222   1e-58
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   222   1e-58
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   222   1e-58
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   219   1e-57
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         211   2e-55
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...   136   5e-33
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)         136   1e-32
At1g18390.1 68414.m02297 protein kinase family protein contains ...    29   1.6  
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi...    29   2.2  
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy...    27   6.6  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/130 (79%), Positives = 118/130 (90%), Gaps = 1/130 (0%)
 Frame = +1

Query: 64  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 243
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 244 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 420
           IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 421 LGGKILGFFF 450
           +GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/130 (79%), Positives = 118/130 (90%), Gaps = 1/130 (0%)
 Frame = +1

Query: 64  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 243
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 244 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 420
           IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 421 LGGKILGFFF 450
           +GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/130 (79%), Positives = 118/130 (90%), Gaps = 1/130 (0%)
 Frame = +1

Query: 64  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 243
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 244 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 420
           IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 421 LGGKILGFFF 450
           +GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  219 bits (534), Expect = 1e-57
 Identities = 101/130 (77%), Positives = 117/130 (90%), Gaps = 1/130 (0%)
 Frame = +1

Query: 64  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 243
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 244 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 420
           IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFG++VLTTS GIMDHEEARRK+
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 421 LGGKILGFFF 450
           +GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  211 bits (515), Expect = 2e-55
 Identities = 97/130 (74%), Positives = 114/130 (87%), Gaps = 1/130 (0%)
 Frame = +1

Query: 64  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 243
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 244 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 420
           IVV L GRLN CGVISPR+D+ + +IE WT  LLPSRQFGY+VLTTS GIMDHEEAR+K+
Sbjct: 67  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126

Query: 421 LGGKILGFFF 450
           +GGK+LGFF+
Sbjct: 127 VGGKVLGFFY 136


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score =  136 bits (330), Expect = 5e-33
 Identities = 61/125 (48%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
 Frame = +1

Query: 79  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 258
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 259 TGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 435
            GR+N C  ++ R DV   +IE++T   LP+RQ+GY+V+TT  GI+DHEEA ++++GG++
Sbjct: 65  QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124

Query: 436 LGFFF 450
           LGFF+
Sbjct: 125 LGFFY 129


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score =  136 bits (328), Expect = 1e-32
 Identities = 62/124 (50%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
 Frame = +1

Query: 79  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 258
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64

Query: 259 TGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 435
            GR+N C  ++ R DV  N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA ++++GG++
Sbjct: 65  QGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQV 124

Query: 436 LGFF 447
           LGFF
Sbjct: 125 LGFF 128


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 142 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 249
           +RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
           histidine--tRNA ligase, putative similar to SP|P12081
           Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
           ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
           PF00587: tRNA synthetase class II core domain (G, H, P,
           S and T), PF03129: Anticodon binding domain
          Length = 479

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +1

Query: 163 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 327
           IVK LT ++    IG++E+  +HR  K+   L G L  CGV   +F    + I++
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKFRTICSSIDK 224


>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
           Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
           conatins Pfam profile: PF00067 cytochrome P450
          Length = 407

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 154 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN----LTGRLNKCGVISPRFDVPINDI 321
           S +I   L ++ K   IG F+I  DH  G + V+    LTG L +  + S +  +   D+
Sbjct: 195 SNLISAMLNMINKPTNIGSFKITSDHLKGVMSVSVYDFLTGTLIRATLGSNKERITEEDL 254

Query: 322 ER 327
           E+
Sbjct: 255 EK 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,545,656
Number of Sequences: 28952
Number of extensions: 183140
Number of successful extensions: 345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)