Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d11
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007...    30   1.6  
05_03_0448 + 14139472-14139786                                         29   4.8  
05_03_0502 - 14754532-14754851,14754959-14755042,14755553-147557...    28   8.3  

>03_06_0603 +
           34999083-34999703,35000092-35000177,35000400-35000796,
           35000906-35001154,35001522-35001749,35002524-35002973,
           35003848-35003961,35004171-35004216,35004408-35004574
          Length = 785

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +2

Query: 482 RPQVPLRQKDFDQIWGDLQEGIEQXYKKQYMVKRRYIDLYTHV 610
           RP+VP  QKD + +  +L++ I +  +  +M KR+++ L+  V
Sbjct: 592 RPKVPGLQKDIEVLKSELEKFIAKYGQDGFMPKRKHLRLHGRV 634


>05_03_0448 + 14139472-14139786
          Length = 104

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 623 TSVHHHSAGSSSRVPQNNIGRVSY 694
           TS HHH  G+++RVP +   +V +
Sbjct: 65  TSNHHHQQGNNNRVPDDPYAKVKF 88


>05_03_0502 -
           14754532-14754851,14754959-14755042,14755553-14755709,
           14756198-14756638,14757590-14757808,14757873-14758193
          Length = 513

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +2

Query: 479 NRPQVPLRQKDFDQIWGDLQEGIEQXYKKQYMVKR----RYIDLYTHVYNYCTSVHHHS- 643
           N+ +  + +   + IWG  ++  +   KK  +  R    ++IDL+  V++  T V +HS 
Sbjct: 155 NKCKKKMTKAQLEYIWGQCKKQYQLWVKKGVIAFRNDPLKHIDLHHAVFSTRTVVGNHSA 214

Query: 644 -AGSSSRVPQNNI 679
            AG+    PQ  +
Sbjct: 215 VAGADQGPPQQPV 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,266
Number of Sequences: 37544
Number of extensions: 306108
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)