Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d11
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50722| Best HMM Match : Cullin (HMM E-Value=1.2e-20)                35   0.056
SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)                29   3.7  
SB_57395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_50722| Best HMM Match : Cullin (HMM E-Value=1.2e-20)
          Length = 385

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +2

Query: 461 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQXYKKQ 568
           M+T  AN P   LRQ + D+IW DL+EGI+  Y +Q
Sbjct: 63  MATRGAN-PH-GLRQINLDEIWDDLKEGIQHVYNQQ 96


>SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)
          Length = 511

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 195 TRFHAVIDHITLFYVLDAIRLSLFYYTTIYNHDSSNFIQFGNTY 64
           T F  +ID   +F  L  + +S+F  T    + + NF+ FG  Y
Sbjct: 86  TTFFLLIDQEPMFTTLPTVLMSMFIMTLGELNYADNFLPFGKQY 129


>SB_57395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = -3

Query: 683 FLCYFEALCW-----SYRRYDDEPTYNNCIREYTD 594
           FLC+  ALCW     + +RYDD+  +  C+  + D
Sbjct: 137 FLCWLFALCWNAIGFAVKRYDDKTGF--CVARWPD 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,430,390
Number of Sequences: 59808
Number of extensions: 405062
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)