Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d11
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27260.1 68418.m03252 hypothetical protein                          29   4.0  
At3g44460.1 68416.m04779 basic leucine zipper transcription fact...    28   6.9  
At4g33690.1 68417.m04785 expressed protein                             27   9.2  
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    27   9.2  
At2g29510.1 68415.m03584 expressed protein                             27   9.2  
At1g03530.1 68414.m00334 expressed protein similar to hypothetic...    27   9.2  

>At5g27260.1 68418.m03252 hypothetical protein
          Length = 303

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 578 KRRYIDLYTHVYNYCTSVHHHSA 646
           ++ Y+D + +VY Y T+ HH S+
Sbjct: 167 RKEYVDDFDNVYEYDTTTHHESS 189


>At3g44460.1 68416.m04779 basic leucine zipper transcription factor
           (BZIP67) identical to basic leucine zipper transcription
           factor GI:18656053 from [Arabidopsis thaliana];
           identical to cDNA basic leucine zipper transcription
           factor (atbzip67 gene) GI:18656052
          Length = 331

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 491 VPLRQKDFDQIWGDLQEGIEQ 553
           VPL +K  D++W ++Q G++Q
Sbjct: 103 VPLCKKTVDEVWLEIQNGVQQ 123


>At4g33690.1 68417.m04785 expressed protein 
          Length = 281

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 133 QSYRIKYIKKCNVVDDSVKTGATTDKQSRTR 225
           Q+ R  ++K+C  VD++V T + +   SR+R
Sbjct: 95  QNNRRDFLKRCTSVDENVTTTSLSPSSSRSR 125


>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 530 DLQEGIEQXYKKQYMVKRRYIDLYTHVYNYCTSVHHH--SAGSSSRVP 667
           ++Q  ++Q  ++Q  +  +    YTH ++Y  + HHH  SAG S   P
Sbjct: 527 NVQMAMQQQQQQQMTMMHQSPYNYTHPHDYHQNHHHHQFSAGPSPSNP 574


>At2g29510.1 68415.m03584 expressed protein
          Length = 839

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 133 QSYRIKYIKKCNVVDD-SVKTGATTDKQ 213
           +SY   YIKKC+ V+D SVK G     Q
Sbjct: 88  KSYVPSYIKKCDKVEDKSVKAGGVIGSQ 115


>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
           protein GB:O14360
          Length = 797

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 127 QAQSYRIKYIKKCNVVDDSVKTGATTDKQSRTRKPNRSVSA 249
           +A+  R++ ++K  ++ D  KTG T +K+ + R P R  S+
Sbjct: 495 EAEYRRMQKLEKRGMMSDQ-KTGNTRNKKKKNRDPGRPTSS 534


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,945,792
Number of Sequences: 28952
Number of extensions: 265602
Number of successful extensions: 615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)