Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d10
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28250.1 68418.m03425 Ulp1 protease family protein contains P...    30   1.7  
At4g29560.1 68417.m04215 expressed protein                             30   1.7  
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    29   2.3  
At4g11070.1 68417.m01798 WRKY family transcription factor other ...    29   3.0  
At2g37930.1 68415.m04656 expressed protein                             27   9.3  
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr...    27   9.3  

>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 939

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 466 ASKRKNTTRSDDYESNKQPDYDMDL-SDFSITEVEATQYLTLL 591
           A +  N T S D ESN  P Y   L SDF++   +  Q ++ +
Sbjct: 408 ADESNNETASGDQESNPPPSYSRPLHSDFNLPSFQGDQAISTI 450


>At4g29560.1 68417.m04215 expressed protein 
          Length = 493

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -2

Query: 404 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVKLVTSGWN 234
           +SN  L     D +    +S P +   K+GS G ++  + V+ + +    LV   WN
Sbjct: 135 ISNLDLDSADEDSMKQVFDSVPDWLSEKLGSAGTILPWLPVSCDDVDSEMLVVDSWN 191


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 360 DGAQQHPLVFCKQNGFSGNACVISFSDHKLHFVSKISNKW 241
           DG+   PL+        G  C++ F D  +HF S I+N++
Sbjct: 799 DGSSTSPLLDLFPTSSEG--CILVFDDSDMHFTSSIANRY 836


>At4g11070.1 68417.m01798 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 313

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 404 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV-SLVSVTTN 273
           VS+ + +IL ++G +T+HN T   + + +  PG +  S  S+T N
Sbjct: 53  VSSFKKAILMLNGSTTQHNPTIELAPDPLAHPGKVPGSPASITGN 97


>At2g37930.1 68415.m04656 expressed protein
          Length = 467

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 226 HNRFHPLVTNFTNKMEFVVTETNDTSI-PGEPILF 327
           H   HP V     +M+ V T T+D+SI   E +LF
Sbjct: 270 HKNEHPFVHTIIGEMKTVTTFTSDSSIHKSETVLF 304


>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 384

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 388 SREFD---TEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 516
           S+E+D   TEA  N END       KT  A+ ++N T+  D +  +
Sbjct: 302 SKEYDEKTTEAEANKENDTQESDEKKTEAAANKENETQESDVKKTE 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,667,217
Number of Sequences: 28952
Number of extensions: 283990
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)