Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8d09
(348 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam ... 48 2e-06
At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam ... 48 2e-06
At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam ... 47 4e-06
At4g03690.1 68417.m00504 hypothetical protein very low similarit... 30 0.49
At4g31630.1 68417.m04493 transcriptional factor B3 family protei... 29 0.64
At5g60640.2 68418.m07611 thioredoxin family protein similar to p... 28 1.5
At5g60640.1 68418.m07610 thioredoxin family protein similar to p... 28 1.5
At2g32590.1 68415.m03979 barren family protein low similarity to... 28 1.5
At1g66070.1 68414.m07499 translation initiation factor-related s... 28 1.5
At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family... 28 2.0
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 28 2.0
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 28 2.0
At2g02880.1 68415.m00238 mucin-related similar to putative mucin... 28 2.0
At1g74870.1 68414.m08677 expressed protein contains similarity t... 28 2.0
At1g77855.1 68414.m09073 hypothetical protein 27 2.6
At5g59230.1 68418.m07423 transcription factor-related low simila... 27 3.4
At5g37475.1 68418.m04510 translation initiation factor-related s... 27 4.5
At5g20930.1 68418.m02486 protein kinase, putative nearly identic... 27 4.5
At4g31510.1 68417.m04475 expressed protein low similarity to MTD... 27 4.5
At4g28410.1 68417.m04067 aminotransferase-related similar to nic... 27 4.5
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 26 6.0
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu... 26 6.0
At2g38550.1 68415.m04736 expressed protein contains Pfam profile... 26 6.0
At1g49920.1 68414.m05598 zinc finger protein-related weak simila... 26 6.0
At5g39785.2 68418.m04819 expressed protein 26 7.9
At5g39785.1 68418.m04818 expressed protein 26 7.9
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 26 7.9
At2g11910.2 68415.m01278 expressed protein 26 7.9
At2g11910.1 68415.m01277 expressed protein 26 7.9
At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ... 26 7.9
>At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +3
Query: 156 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 287
E+W ++ E WED+W+DD + DDF++QLR++LE D+K
Sbjct: 31 EDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74
>At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +3
Query: 156 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 287
E+W ++ E WED+W+DD + DDF++QLR++LE D+K
Sbjct: 31 EDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74
>At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 73
Score = 46.8 bits (106), Expect = 4e-06
Identities = 19/45 (42%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +3
Query: 156 ENWGTEDADDEDVSV-WEDNWEDDVIQDDFNQQLRQQLEKLKDQK 287
E+W E + ++VS+ WED+W+DD + DDF++QL+++LE ++K
Sbjct: 30 EDW-LEKEEVKEVSLQWEDDWDDDDVSDDFSRQLKKELENASEKK 73
>At4g03690.1 68417.m00504 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 570
Score = 29.9 bits (64), Expect = 0.49
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 198 VWEDNWEDDVIQDDFNQQLRQQLEK 272
VWE W+ ++ +DF ++LR QLE+
Sbjct: 156 VWEHTWK--ILSEDFKRKLRNQLER 178
>At4g31630.1 68417.m04493 transcriptional factor B3 family protein
similar to reproductive meristem gene 1 from [Brassica
oleracea var. botrytis] GI:3170424, [Arabidopsis
thaliana] GI:13604227; contains Pfam profile PF02362: B3
DNA binding domain
Length = 512
Score = 29.5 bits (63), Expect = 0.64
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 168 TEDADDEDVSVWEDNWEDDVIQDDFN 245
T D DD++ +V++D+ +DDV DD N
Sbjct: 114 TSDDDDDERTVFDDDEDDDVGDDDDN 139
>At5g60640.2 68418.m07611 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 536
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 168 TEDADDEDVSVWEDNWEDDV 227
++D DDED+S ED EDDV
Sbjct: 29 SDDVDDEDLSFLEDLKEDDV 48
>At5g60640.1 68418.m07610 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 597
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 168 TEDADDEDVSVWEDNWEDDV 227
++D DDED+S ED EDDV
Sbjct: 29 SDDVDDEDLSFLEDLKEDDV 48
>At2g32590.1 68415.m03979 barren family protein low similarity to
SP|Q9Y7R3 Condensin complex subunit 2 (p105)
{Schizosaccharomyces pombe}; contains Pfam profile
PF05786: Barren protein
Length = 704
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 156 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQ--QLEKLKDQ 284
E+WG ++ D+D ++DN D +D N + Q Q+ K+ Q
Sbjct: 557 ESWGNDNVYDDDDGPFDDNENDQSDAEDTNTLISQPRQVNKIDVQ 601
>At1g66070.1 68414.m07499 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 226
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 159 NWGTEDADDEDVSVWEDNWEDD 224
NW ED D+ ++ +D+WEDD
Sbjct: 21 NWDDEDVDENEI---KDSWEDD 39
>At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family
protein contains Pfam profile PF04889: Cwf15/Cwc15 cell
cycle control protein; similar to Cell cycle control
protein cwf15 (Swiss-Prot:P78794) [Schizosaccharomyces
pombe]
Length = 230
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 174 DADDEDVSVWEDNWEDDVIQD---DFNQQLRQQLEKLKDQK 287
DADD DV + D+ DD D D + L +L+++K ++
Sbjct: 109 DADDSDVDIKSDDDSDDESDDDDEDDTEALMAELDQIKKER 149
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 156 ENWGTEDADDEDVSVWEDNWEDDVIQDD 239
+ + +D DDED S ED+++DD DD
Sbjct: 83 DEFSEDDYDDEDFS--EDDYDDDEFDDD 108
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 156 ENWGTEDADDEDVSVWEDNWEDDVIQDD 239
+ + +D DDED S ED+++DD DD
Sbjct: 182 DEFSEDDYDDEDFS--EDDYDDDEFDDD 207
>At2g02880.1 68415.m00238 mucin-related similar to putative mucin
GI:18071389 [Oryza sativa]
Length = 314
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 168 TEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 272
T+ +DED W D WE + DD ++R E+
Sbjct: 37 TKSGNDEDK--WNDAWESAWLPDDLTDKIRAPWER 69
>At1g74870.1 68414.m08677 expressed protein contains similarity to
hypothetical proteins
Length = 289
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 201 WEDNWED-DVIQDDFNQQLRQQLEKLKDQKS 290
W W+ +V +++ ++LR LEKL DQK+
Sbjct: 43 WISQWKKANVDEEEIGRRLRSLLEKLTDQKA 73
>At1g77855.1 68414.m09073 hypothetical protein
Length = 317
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 192 HLHHQRLLYPNFPREILR 139
H HH+RLL P R+++R
Sbjct: 109 HYHHRRLLSPQISRQVIR 126
>At5g59230.1 68418.m07423 transcription factor-related low
similarity to transcription factor IIA large subunit
[Arabidopsis thaliana] GI:2826884
Length = 186
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 174 DADDEDVSVWEDNWEDDVIQDDFNQQ--LRQQLEKLKDQKS 290
D ++E ++ +D+ EDD+ DD N Q + Q +K+K K+
Sbjct: 117 DENEEPLNEDDDDEEDDIDDDDMNIQHLVMCQFDKVKRSKN 157
>At5g37475.1 68418.m04510 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 225
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 159 NWGTEDADDEDVSVWEDNWEDD 224
NW ED D+ D+ +D+WE++
Sbjct: 21 NWDDEDVDENDI---KDSWEEE 39
>At5g20930.1 68418.m02486 protein kinase, putative nearly identical
to protein kinase tousled gi|433052|gb|AAA32874
Length = 688
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 207 DNWEDDVIQDDFNQQLRQQLE 269
+ WED + D N QLRQ LE
Sbjct: 295 ETWEDGQMLKDLNAQLRQLLE 315
>At4g31510.1 68417.m04475 expressed protein low similarity to MTD1
[Medicago truncatula] GI:9294810
Length = 214
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = +3
Query: 171 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 287
+++D+ED + +D+ +DD DD +L+++ K+ + +
Sbjct: 154 QESDNEDHKLNDDDDDDDSSSDDETSKLKEKRMKMTNHR 192
>At4g28410.1 68417.m04067 aminotransferase-related similar to
nicotianamine aminotransferase [Hordeum vulgare subsp.
vulgare] GI:6469090
Length = 447
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 116 TKVYFLFVSHYTVMIIEIRKYHLM 45
T +Y L+ SH ++EIRKY+L+
Sbjct: 164 TLIYPLYNSHAIHSLVEIRKYNLL 187
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = -1
Query: 225 RRLPSCLPKPIHL---HHQRLLY-PNFPREIL 142
R LPSCLP +HL H Y P +P+ ++
Sbjct: 267 RWLPSCLPSDVHLVFGHQDNPAYLPRWPKVVV 298
>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
putative similar to cytosine-5 methyltransferase (METII)
[Arabidopsis thaliana] GI:6523846; contains Pfam
profiles PF01426: BAH domain, PF00145: C-5
cytosine-specific DNA methylase
Length = 1404
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 150 PAENWGTEDADDE--DVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 278
P E G E+ +E DV ++N E+D IQ Q L+K++
Sbjct: 537 PLEEIGAEEEFEEVEDVEEEDENEEEDTIQKAIEVQKADTLKKIR 581
>At2g38550.1 68415.m04736 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 335
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 171 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 290
ED+ + V V ++ + DV D + +Q LE K+Q S
Sbjct: 79 EDSGESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQVS 118
>At1g49920.1 68414.m05598 zinc finger protein-related weak
similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
mays] GI:1857256; contains Pfam profiles PF03108: MuDR
family transposase, PF04434: SWIM zinc finger
Length = 785
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 165 GTEDADDEDVSVWEDNWEDDVIQDD 239
G +D ++ED V +D +DD + DD
Sbjct: 756 GDDDEEEEDDDVDDDEEDDDDVDDD 780
>At5g39785.2 68418.m04819 expressed protein
Length = 607
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 168 TEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 278
+E+ ++ED + +E WE D +QL+ +++K+K
Sbjct: 192 SEEEEEEDTNGFESLWE----HQDLIEQLKMEMKKVK 224
>At5g39785.1 68418.m04818 expressed protein
Length = 606
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 168 TEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 278
+E+ ++ED + +E WE D +QL+ +++K+K
Sbjct: 192 SEEEEEEDTNGFESLWE----HQDLIEQLKMEMKKVK 224
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 171 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 275
ED +DE+V +D+ +DD DD + ++ + + +L
Sbjct: 87 EDCEDENVESEDDDDDDDDDDDDRHSRMLKNVTEL 121
>At2g11910.2 68415.m01278 expressed protein
Length = 168
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 156 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQ 251
EN D+DD+D ED EDD +DD N +
Sbjct: 68 ENKDASDSDDDDDD--EDADEDDDDEDDANDE 97
>At2g11910.1 68415.m01277 expressed protein
Length = 168
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 156 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQ 251
EN D+DD+D ED EDD +DD N +
Sbjct: 68 ENKDASDSDDDDDD--EDADEDDDDEDDANDE 97
>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
putative similar to pathogen-inducible alpha-dioxygenase
[Nicotiana attenuata] GI:12539609; contains Pfam profile
PF03098: Animal haem peroxidase
Length = 631
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 150 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 278
P W D+E + V + +EDD+ + D N L + +K+K
Sbjct: 498 PISKWEELTDDEEAIKVLREVYEDDIEKLDLNVGLHAE-KKIK 539
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,655,460
Number of Sequences: 28952
Number of extensions: 98103
Number of successful extensions: 452
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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