Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d07
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.38 
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   3.6  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   6.2  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    24   8.2  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   8.2  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 77  CHIWFDTPAPFFSRYHTQTQ 136
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 319 TVESQTRAGDEIASFLRYC 263
           T+E   +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
 Frame = +2

Query: 5   VKTTAT*ITQFKHGLSSPSSFFXRCHIWFDTPAPFFSRY--HTQTQKLGLQTPPG*TSHI 178
           + TT T      H L S        H    TP         H     + ++   G   H+
Sbjct: 540 IYTTYTDFEDLDHRLYSIKKCLLHLH---STPLHILEEIIRHLSAYAISIRMKDGQIRHL 596

Query: 179 QKIXEPFIDKPPXLQNTLLLTAXHST 256
            KI  P + +PP   N + +   H T
Sbjct: 597 AKIISPCVLRPPDDLNIIPVEDTHPT 622


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 116 RYHTQTQKLGLQTPPG*TSHIQKIXEPFIDKP 211
           +Y T T K  L TPP    HI      F   P
Sbjct: 382 QYDTSTSKAELSTPPSKRRHIDDADLVFHSSP 413


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 379 KNKLFELSGLSLKSCRHDFVTVESQTRAGDEIASF 275
           KNKL + S + L SC    +   S TR   + +S+
Sbjct: 78  KNKLSKESAIQLSSCIRKTLLAPSSTRVPSKNSSY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,690
Number of Sequences: 5004
Number of extensions: 21089
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)