Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d07
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    29   1.1  
01_07_0315 - 42692539-42693260,42693357-42693609                       28   3.5  
08_01_0083 - 604175-605776                                             27   6.0  
08_01_0082 - 588269-588434,590800-591653                               27   6.0  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     27   6.0  
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591...    27   8.0  
01_07_0317 + 42699035-42699305,42699411-42700132                       27   8.0  

>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 114 LKNGAGVSNHMWHRXKNDDGDDXPCLN 34
           L  G G +NH  H   +DD DD P L+
Sbjct: 56  LMRGGGAANHHHHDDDDDDDDDVPWLH 82


>01_07_0315 - 42692539-42693260,42693357-42693609
          Length = 324

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 195 GSXIFCMCEVYPGGVC-NPSF 136
           G   FCMC+ YPG  C +P F
Sbjct: 79  GCKTFCMCDFYPGVSCGDPRF 99


>08_01_0083 - 604175-605776
          Length = 533

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTQKLGLQTPPG*TSHIQKIXE 193
           TPAP F R+  +T  + +  P G   HI +  E
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLE 250


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTQKLGLQTPPG*TSHIQKIXE 193
           TPAP F R+  +T  + +  P G   HI +  E
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLE 253


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 217 VTEHATINSXTFHTSDSSEGTKRFRRLPSF 306
           ++EH T  S   HT  S+   ++ RRL SF
Sbjct: 697 ISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


>04_04_0532 +
           26058100-26058229,26058355-26058559,26058678-26059157,
           26059262-26059354,26059526-26059636,26059720-26059792,
           26060072-26060208,26061040-26061097
          Length = 428

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 115 PVSHADAEARVTDAARVDLAHTEDPGAV 198
           P +   A  R T  A+VD A  EDPG +
Sbjct: 87  PQAPPPAPTRATKKAKVDAAKNEDPGGM 114


>01_07_0317 + 42699035-42699305,42699411-42700132
          Length = 330

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 183 FCMCEVYPGGVC-NPSF 136
           FCMC+ YPG  C +P F
Sbjct: 89  FCMCDFYPGVSCGDPRF 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,542,311
Number of Sequences: 37544
Number of extensions: 146188
Number of successful extensions: 310
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)