Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d07
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         27   4.7  
SB_59035| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 117 RLKNGAGVSNHMWHRXKNDDGDD 49
           +LK+GA  ++H WH  +   GDD
Sbjct: 377 KLKDGAKTTDHNWHVHEKPVGDD 399


>SB_59035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 261 RQ*RRNEAISSPALVWLSTVTKSC 332
           +Q  +N+A S P ++WLS V ++C
Sbjct: 102 KQAAQNDAQSFPLILWLSVVRQNC 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,028,826
Number of Sequences: 59808
Number of extensions: 168362
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)