Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d07
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z82278-8|CAB05251.2|  312|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical p...    27   7.2  

>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -1

Query: 180 CMCE-VYPGGVC-NPSFCVCV*YRLKNGAGVSNHMWHRXKNDDGDDXPCLNC 31
           C+CE ++ G  C NP    C      NG  V N  +++ K D  D     NC
Sbjct: 328 CICEPLWTGPDCENPVASACTPNPCVNGTCVLNEQYNKYKCDCDDGFSGDNC 379


>Z82278-8|CAB05251.2|  312|Caenorhabditis elegans Hypothetical
           protein M162.8 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 221 QNTLLLTAXHSTXPTVAKERSDFVACPRLAFDCYKIVSARF 343
           +N +L+    ++   + +   DF+A P+L  D ++I +A F
Sbjct: 99  KNPVLMRISRNSLNEILRVLEDFLAIPKLEIDHFRIKAAMF 139


>U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical
           protein ZC404.11 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
 Frame = -1

Query: 237 NSSVFCNXGGLSMNGSXIFCMCEVYPGGVCN---PS-----FCVCV*YRLKNGAGVSNHM 82
           + SVF +   LS+    +F    ++  G C    PS     F + +  R+K G   SN +
Sbjct: 154 DGSVFLDISPLSLANDCLFLKTSIFFSGSCFKILPSILMSMFSIIILIRIKAGKQRSNSL 213

Query: 81  WHRXKNDDGDDXPCLNCVIYVAVVF 7
            H   + D         +  V VVF
Sbjct: 214 SHNQTDQDAQIDRSTRFIQVVVVVF 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,428,447
Number of Sequences: 27780
Number of extensions: 129617
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)