Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d07
         (417 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    30   0.54 
At4g29280.1 68417.m04186 expressed protein ; expression supporte...    29   1.3  
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein...    28   2.2  
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    27   3.8  
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro...    27   5.1  
At3g10100.1 68416.m01210 filament protein-related similar to YEA...    27   6.7  
At2g09910.1 68415.m01029 hypothetical protein                          27   6.7  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    26   8.9  
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro...    26   8.9  
At4g20730.1 68417.m03013 filament protein-related similar to Cyt...    26   8.9  

>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 273 FATVGXVECXAVNSSVFCNXGGLSMNGSXIFC 178
           F+      C  + ++V C+ GG S NGS ++C
Sbjct: 781 FSVTITCSCGRITATVPCDAGGRSANGSNVYC 812


>At4g29280.1 68417.m04186 expressed protein ; expression supported
           by MPSS
          Length = 77

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 180 CMCEVYPGGVCNPSFCVCV*YRLKNGAG 97
           C   ++PG  C+PS CV   Y   NG G
Sbjct: 31  CTIIIHPGSPCDPSDCVQYCYAEYNGVG 58


>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 604

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 400 IYLQNSNKNKLFELSGLSLKSCRHDFVTVESQTRA 296
           ++L+ S    LF    LSLK  +HDFV V++ T++
Sbjct: 21  LFLKTSQS--LFPRPSLSLKPMKHDFVCVKATTKS 53


>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 11  TTAT*ITQFKHGLSSPSSFFXRCHIWFDTPAPFFSRYHTQTQKLGLQTP 157
           TT T  T      SS SS   R    + +P+P  SR  T +    ++TP
Sbjct: 55  TTTTTTTTTSSSSSSSSSAILRTSKRYPSPSPLLSRSTTNSASNSIKTP 103


>At4g15200.1 68417.m02329 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 600

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 385 SNKNKLFELSGLSLKSCRHDFVTVESQTRAG 293
           S+K + F LS +SLK   H+F T ES + AG
Sbjct: 223 SSKKRSF-LSRVSLKRNGHEFSTAESSSAAG 252


>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
           NUF1 protein (Spindle poly body spacer protein SPC110)
           (SP:P32380) {Saccharomyces cerevisiae}; similar to
           Myosin heavy chain, smooth muscle isoform (SMMHC)
           (SP:P35749) {Homo sapiens}
          Length = 1004

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 62  SFFXRCHIWFDTPAPFFSRYHTQTQKLGLQTP 157
           ++F +CH+WF  P+   S  + +       TP
Sbjct: 168 AYFRQCHLWFPIPSLIISFLNRRRMAFSQLTP 199


>At2g09910.1 68415.m01029 hypothetical protein
          Length = 985

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 62  SFFXRCHIWFDTPAPFFSRYHTQTQKLGLQTP 157
           ++F +CH+WF  P+   S  + +       TP
Sbjct: 169 AYFRQCHLWFPIPSLIISFLNRRRMAFSQLTP 200


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 271 EGTKRFRRLPSFGFRLLQNRVCKILN 348
           E   RF  LP++GFR LQ+ + +  N
Sbjct: 882 EAKVRFTLLPTWGFRELQHEIARRFN 907


>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
           protein similar to meiotic asynaptic mutant 1
           [Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
           oleracea var. alboglabra] GI:23506946; contains Pfam
           profile PF02301: HORMA domain
          Length = 1399

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 62  SFFXRCHIWFDTPA---PFFSRYHTQTQKL 142
           ++F +CH+WF  P+    F +R H    +L
Sbjct: 760 AYFRQCHLWFPIPSLIISFLNRRHMAFSQL 789


>At4g20730.1 68417.m03013 filament protein-related similar to
           Cytadherence high molecular weight protein 2 (SP:P47460)
              [Mycoplasma genitalium]; similar to YEAST NUF1
           protein (Spindle poly body spacer protein SPC110)
           (SP:P32380) {Saccharomyces cerevisiae}; also
           SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
           muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
           filament protein SP|P12882|MYH1_HUMAN Myosin heavy
           chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
           cell intermediate filament protein
          Length = 800

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 62  SFFXRCHIWFDTPA---PFFSRYHTQTQKL 142
           ++F +CH+WF  P+    F +R H    +L
Sbjct: 169 AYFRQCHLWFPIPSLIISFLNRRHMAFSQL 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,814,178
Number of Sequences: 28952
Number of extensions: 115335
Number of successful extensions: 239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)