Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d05
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...   130   5e-31
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)           127   3e-30
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)           127   4e-30
At4g17250.1 68417.m02594 expressed protein                             28   2.5  
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse...    28   2.5  
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse...    28   2.5  
At3g51220.1 68416.m05607 expressed protein contains Pfam doamin ...    27   4.3  
At1g32900.1 68414.m04053 starch synthase, putative similar to st...    27   5.7  
At3g43960.1 68416.m04706 cysteine proteinase, putative contains ...    26   10.0 
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ...    26   10.0 

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score =  130 bits (313), Expect = 5e-31
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
 Frame = +2

Query: 65  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 244
           E+KG+    EVVTREYT+NLH+RLH   FKK+AP+AIKEIRKFAEK+MGT D+RVD +LN
Sbjct: 3   EKKGRK--EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60

Query: 245 KFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 406
           K +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score =  127 bits (307), Expect = 3e-30
 Identities = 61/116 (52%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
 Frame = +2

Query: 65  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 244
           E+KG+    EV+TREYT+NLH+RLH   FKK+AP+AIKEIRKFAEK MGT D+RVD +LN
Sbjct: 3   EKKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60

Query: 245 KFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 406
           K +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score =  127 bits (306), Expect = 4e-30
 Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
 Frame = +2

Query: 71  KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 250
           KGK    EVVTREYT+NLH+RLH   FKK+AP AIKEIRKFA K MGT D+RVD +LNK 
Sbjct: 3   KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQ 62

Query: 251 LWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 415
           +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++  +
Sbjct: 63  IWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


>At4g17250.1 68417.m02594 expressed protein
          Length = 416

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 113 TVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVD 232
           TV   KR   + +KKR   A+K+   + E++ G P ++ D
Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208


>At3g19400.2 68416.m02460 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 290

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 107 EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 250
           ++ V   K  +G+G K+R  +  K+  KF ++    PD   +  L +F
Sbjct: 46  QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93


>At3g19400.1 68416.m02461 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 362

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 107 EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 250
           ++ V   K  +G+G K+R  +  K+  KF ++    PD   +  L +F
Sbjct: 46  QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93


>At3g51220.1 68416.m05607 expressed protein contains Pfam doamin
           PF05701: Plant protein of unknown function (DUF827)
          Length = 186

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +2

Query: 38  KITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP 217
           K  + K + E K  S + E +T+E      K  H +      P+   +++   E  +  P
Sbjct: 53  KENLKKAEEENKVLSQLIESLTQELETTKEKLNHSLRNFPEHPQVEDDLKFIEESTVNEP 112

Query: 218 DIRVDTRLNKF 250
           D   + ++N+F
Sbjct: 113 DNITEIKMNRF 123


>At1g32900.1 68414.m04053 starch synthase, putative similar to
           starch synthase SP:Q42857 from [Ipomoea batatas]
          Length = 610

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 65  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 229
           E+KG   + E +++   +N+   + G G KK   + ++   KF  K +G     V
Sbjct: 412 EQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNV 466


>At3g43960.1 68416.m04706 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 376

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 92  EVVT--REYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 250
           EV+T   ++ V   K  +G+G K+R  +  K+  K  E+    P+   +  LNKF
Sbjct: 36  EVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKF 90


>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
           protein / LIM domain-containing protein weak similarity
           to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
           [Mus musculus] GI:664955; contains Pfam profiles
           PF02809: Ubiquitin interaction motif, PF00412: LIM
           domain
          Length = 532

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 302 KASHGHGREHF*LP*TKGICLSE 234
           +A  G    H+ +P T+G+CLSE
Sbjct: 342 EAREGEKNGHYHMPETRGLCLSE 364


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,232,203
Number of Sequences: 28952
Number of extensions: 172379
Number of successful extensions: 342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)