Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8d02
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)            131   4e-31
SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)                   29   3.3  
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)                   28   4.3  

>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
          Length = 115

 Score =  131 bits (316), Expect = 4e-31
 Identities = 61/104 (58%), Positives = 74/104 (71%)
 Frame = +2

Query: 176 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 355
           RLY K +  G+KRGLRNQH NT+L+K+EG  +R +  FY GK   +VYRAK +T   G  
Sbjct: 6   RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFYLGKRLAFVYRAKNKTVAKGDK 65

Query: 356 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVM 487
             K TKLR IWGKVTR HGNSG VRAKF+ NLP +AMG  +RV+
Sbjct: 66  --KATKLRVIWGKVTRAHGNSGVVRAKFRHNLPPKAMGATVRVI 107


>SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 453 GRLDLNLARTLPELPCGRVTLPQI 382
           G  DLN+ +T+P + C R+  P++
Sbjct: 257 GLFDLNIGQTIPSVTCRRIPFPEL 280


>SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)
          Length = 354

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 278 DAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLR 379
           D+ F+AG   +     K   P+ GGPR +  +LR
Sbjct: 168 DSTFWAGPETISRRMLKGEVPVQGGPRKEAKRLR 201


>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 614

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -2

Query: 442 LELGSDTARVAMWAG----HLAPDSTQLGFFATGTSGNWC 335
           L L   TA + +W G    HLA D   +  FATG S  WC
Sbjct: 12  LALRQPTASLNIWEGRAPPHLAVDGVNMSTFATG-STIWC 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,744,311
Number of Sequences: 59808
Number of extensions: 356244
Number of successful extensions: 815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)