Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8c24
(382 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07) 29 0.97
SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14) 27 6.8
SB_44508| Best HMM Match : YTH (HMM E-Value=1.4) 27 6.8
SB_33544| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 26 9.0
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06) 26 9.0
SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 26 9.0
>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
Length = 592
Score = 29.5 bits (63), Expect = 0.97
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +1
Query: 34 YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 204
+ + + DN L T L +K+ G +VFD FDT+ +R + DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367
Query: 205 KTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVK 318
+ L I+ SS++ R V +R + SD VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405
>SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 291 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQ 169
R+MA+ + + L GR R RE++ VLK P VV +
Sbjct: 30 RSMAQSFLSGISLDGRIMREPRTRERNDEKVLKPTPTVVTE 70
>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 116 STSSIPPATFQLLPSIPYCTTTSGR 190
+T SIP A PS+PY TT R
Sbjct: 323 TTGSIPTAITSSEPSVPYSTTRDSR 347
>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 892
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 322 KILRRLQRSRKKHGENLPTGGRSRRKG-EKLE 230
K LR+ Q ++ K + P GGRS R EKL+
Sbjct: 713 KALRKAQETKGKLADGKPVGGRSGRPAIEKLQ 744
>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
Length = 1083
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 127 DPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSA 225
D Y P D V +N+ TVL DNK L++
Sbjct: 309 DLKWYVFDGPVDAVWIENMNTVLDDNKKLCLTS 341
>SB_44508| Best HMM Match : YTH (HMM E-Value=1.4)
Length = 402
Score = 26.6 bits (56), Expect = 6.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Frame = +1
Query: 13 TNQAIIDYKVKIADNN-------LVTHKELALKVSSIIGTRVYV 123
TN A+I +++ + D+N LV K LKV GT VYV
Sbjct: 261 TNFAMITHEIALEDDNGKDMFFPLVGSKPFCLKVGKYFGTVVYV 304
>SB_33544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -2
Query: 348 PKTV---KNKGLRFYVDSKGVGRNMARI 274
PKT+ KNKGL ++SKG+G R+
Sbjct: 173 PKTLDLLKNKGLTLNMESKGIGPTEYRV 200
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -2
Query: 246 RERSLNRCREKSSFVVL---KNRPDVVVQYGIEGRS*KVAGGIEDVD 115
R RS RCR KSS + K++ + + +Y ++ VAG VD
Sbjct: 364 RSRSRRRCRSKSSSIASSPDKSKDEDMSKYMLDASDKPVAGAKPTVD 410
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 154 PFDTVLYDNIRTVLKDNKTALLS 222
P D + +N+ +VL DNKT L+
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLA 2308
>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
Length = 1532
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 154 PFDTVLYDNIRTVLKDNKTALLS 222
P D + +N+ +VL DNKT L+
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLA 1406
>SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 91 VSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTV 192
+S +IGT V++ + Y PP +VL D R V
Sbjct: 232 ISMMIGTVVFMTGRNWYVVRPPGGSVLTDTYRVV 265
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 154 PFDTVLYDNIRTVLKDNKTALLS 222
P D + +N+ +VL DNKT L+
Sbjct: 2292 PVDAIWIENLNSVLDDNKTLTLA 2314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,709,455
Number of Sequences: 59808
Number of extensions: 189968
Number of successful extensions: 498
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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