Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8c19
(530 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 158 2e-39
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 157 4e-39
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 155 1e-38
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 1.5
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 29 2.0
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 29 2.6
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.9
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi... 27 7.9
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 27 7.9
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 158 bits (383), Expect = 2e-39
Identities = 70/130 (53%), Positives = 93/130 (71%)
Frame = +2
Query: 44 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 223
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 224 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 403
Y+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRIT 125
Query: 404 TQGRRDLDRI 433
+ G+RDLD++
Sbjct: 126 SSGQRDLDQV 135
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 157 bits (381), Expect = 4e-39
Identities = 68/130 (52%), Positives = 93/130 (71%)
Frame = +2
Query: 44 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 223
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 224 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 403
Y+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRIT 125
Query: 404 TQGRRDLDRI 433
+ G+RDLD++
Sbjct: 126 SSGQRDLDQV 135
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 155 bits (377), Expect = 1e-38
Identities = 66/130 (50%), Positives = 94/130 (72%)
Frame = +2
Query: 44 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 223
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 224 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 403
Y+R +GV +I+GG KRNG P HFC+SSG +AR LQ L+ + +V+ GGR +T
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKIT 125
Query: 404 TQGRRDLDRI 433
+ G+RDLD++
Sbjct: 126 SSGQRDLDQV 135
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 389 HRPELSQQASMPPTIAKPCVQYCLM 315
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 89 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 235
+H + V P D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 305 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 433
FCRSSG A + + ++ + + K +DG ++L RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 53 DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 169
+VE D+ V A K+T + + E VKT F+ELA
Sbjct: 30 NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 633
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 242 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVE--KVQDGGRILTTQGR 415
G + ++F G R+G PSHF +S A + LE K V ++ G +++ G
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301
Query: 416 RDLD 427
LD
Sbjct: 302 TLLD 305
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 429 LSRSRLPCVVRMRXXXXXXXXXFNASNDCKALRAILPDDLQKCEGVTPLRLR 274
+S SRL C+ + + NA +D +DL+K G +PL L+
Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLK 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,765,284
Number of Sequences: 28952
Number of extensions: 211622
Number of successful extensions: 500
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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