Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c13
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.59 
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    22   4.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.6  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 320 PDRCNVRRYVGRVPCTCP 267
           P   + RRY GR  C CP
Sbjct: 277 PSPRSQRRYTGRATCDCP 294


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 646 FRLHQLNIITKSFQHYL*RVGHATNV 569
           +RL+QL+++  +   Y+  V  ATN+
Sbjct: 149 YRLYQLSVLIDNNMSYIIIVSFATNL 174


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 385 AFNRKSAGHSNESVAHNNY 441
           +FN  + GH + + +HN Y
Sbjct: 283 SFNWTANGHGHNTSSHNYY 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,925
Number of Sequences: 336
Number of extensions: 2792
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)