Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8c13
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33) 33 0.17
SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018) 32 0.51
SB_58746| Best HMM Match : RA (HMM E-Value=0.85) 31 0.89
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 31 0.89
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_52224| Best HMM Match : DUF1484 (HMM E-Value=5.6) 30 2.1
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26) 30 2.1
SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_38422| Best HMM Match : Baculo_PEP_C (HMM E-Value=7) 29 2.7
SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_7603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_59170| Best HMM Match : RVT_1 (HMM E-Value=0.13) 29 4.8
SB_34381| Best HMM Match : Flagellin_IN (HMM E-Value=5.7) 29 4.8
SB_30286| Best HMM Match : DUF321 (HMM E-Value=1.2) 29 4.8
SB_21986| Best HMM Match : Flagellin_IN (HMM E-Value=8.3) 29 4.8
SB_15041| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_33959| Best HMM Match : Herpes_US9 (HMM E-Value=2) 29 4.8
SB_19059| Best HMM Match : Arm (HMM E-Value=0.044) 29 4.8
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_58363| Best HMM Match : LETM1 (HMM E-Value=0) 28 6.3
SB_751| Best HMM Match : rve (HMM E-Value=7.5e-12) 28 6.3
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 28 6.3
SB_6358| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1) 28 8.3
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 28 8.3
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 28 8.3
SB_8313| Best HMM Match : Tim17 (HMM E-Value=1.3) 28 8.3
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
Length = 732
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 8 EECYVKIDRLFKESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQ 157
E+ VK+++ K+S+KK+ + E E+E E ERL+ E A L +A+
Sbjct: 228 EDAKVKLEQEKKDSVKKLKERLEK-ERESEEERLQKEHDAVMRTLGDKAR 276
>SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)
Length = 786
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 23 KIDRLFKESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDVVN 181
K+D LF+ES + +F+ E R E T+ NA + ++T+ DD++N
Sbjct: 436 KVDELFQESRASQAVKSVSFDDEHPLPSDRTESTSKNAGSDVNSKTTFDDLLN 488
>SB_58746| Best HMM Match : RA (HMM E-Value=0.85)
Length = 820
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 83 EKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
E+E + + A T A S +++NRA++ I TA DPL G A
Sbjct: 576 EREHQITTIAALPTIATLPAGHHTAESIVEMINRAESKILTAKLDPLTGKIA 627
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 31.1 bits (67), Expect = 0.89
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = +2
Query: 89 EQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSAPRYMYESSES 268
+ E++R R ++ + +Q S DD R D N + S P + +E
Sbjct: 408 KDESQRSRDDKEKRPDINKDDSQRSRDDKEKRPDVNKDDSQSSIDDKEKRPDVNKQKNEK 467
Query: 269 DTYMEPARHTAEHYTDQDKDYNAAYTADEYN 361
YM A + +HY ++DK+ N A + D+ N
Sbjct: 468 --YMNVA--SKDHYMNKDKEENRANSDDDGN 494
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 116 EQTAANALLNRRAQTSADDVVNRADA-NI---STAFSDPLPGSSAPRYMYESSESDTYME 283
+Q +A A+++R+ ++ V + + NI +TA P+P SA MY S ES E
Sbjct: 801 QQGSATAVVSRQYLSAYPSAVTYSQSQNIGLSATASPSPIPQHSAAPVMYSSQESRISGE 860
Query: 284 PARHTAEHY 310
PA ++
Sbjct: 861 PASRLGSYF 869
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 30.7 bits (66), Expect = 1.2
Identities = 53/245 (21%), Positives = 103/245 (42%), Gaps = 17/245 (6%)
Frame = +2
Query: 2 KAEECYVKIDRLFKESIKKIMDDTE----AFEKEQEAERLRAEQTAANAL--LNRRAQTS 163
+AE+ K + L KE +KK ++D A E + E + + +++ N L +N+R
Sbjct: 470 EAEQALSKAN-LEKEELKKQINDLSSRVTALENQTEEDAVE-KKSLKNQLDKVNKRVTEH 527
Query: 164 ADDVVNRADANISTAFS-DPLPGSSAPR--YMYESSESDTYMEPARHTAEHYTDQDKDYN 334
D+++N + + + D R + + + Y+E + + D +D N
Sbjct: 528 QDELMNLDQSLVEHKIAVDAHTKEKTQREALLDKLRATKDYLEEQNESLKASLDAARDSN 587
Query: 335 AAYTADEYNSLVRTVLLRLIEKALATLTNRL---HITTIDQLK----KFRDYLNSDADAG 493
AD+ L L+ + L +L ++ K K +D DA
Sbjct: 588 DLLKADQSKLLKEIADLKNDKNQLKQANQKLGHDRERAVEDAKDAFAKIKDLEKQLEDAI 647
Query: 494 EFQIFLNQEDCVMLKNLSNLASKFFNV-RCVADTLEVMLEALRNNIELVQPESDAVRXNS 670
E + QE + +L L + + R +AD L+ EAL++ ++ + E+DA+R
Sbjct: 648 EKRKHAEQESDELEADLQKLKDELASTKRHIAD-LQDKHEALKDELDKTEDENDALRDKK 706
Query: 671 HKNDA 685
+ +A
Sbjct: 707 KELEA 711
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 359 CTRRQCTPRCSPCPDRCNVRRYVGRVPCTCP 267
C R SPC + R +G V CTCP
Sbjct: 1974 CMNRTNVCASSPCQNNATCRDVMGHVKCTCP 2004
>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1373
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 83 EKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
E+E + + A A R S + +NRA++ I TA DPL G A
Sbjct: 241 EREHQITTIAALPPIATLPAGRHTAESIVETINRAESKILTAKLDPLTGKIA 292
>SB_52224| Best HMM Match : DUF1484 (HMM E-Value=5.6)
Length = 128
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +2
Query: 80 FEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
F ER T A+ L S + +NRA++ I TA DPL G A
Sbjct: 35 FNSWYNLEREHQITTIASLLSRHHTAESIVETINRAESKILTAKLDPLTGKIA 87
>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
Length = 1418
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 223 SRFQRAAVHVRKFRIGHVHGTRPTYRRTLHRSGQGLQRGVHCRRVQFPGQDGSFAFNRKS 402
SRF+RAA+ + + + + P ++R S +G + F DG FA RK+
Sbjct: 50 SRFRRAAIKAKNYWVFTRRASSPHWKRIRRSSFEGF---FASKGAAFSIPDGDFA--RKA 104
Query: 403 AGHSNESVAH 432
+ H E H
Sbjct: 105 SKHGGEMQVH 114
>SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 80 FEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPG 229
FE+E + + A A S + +NRA++ + TA DPL G
Sbjct: 21 FEREHQITTIAALPPIATLPAGHHTAESIVETINRAESKVLTAKLDPLTG 70
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 41 KESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRAD 190
KE + M ++E E+E+E E +AEQ A L ++ ++V R +
Sbjct: 1357 KELMVWRMRNSELIEREEEVEHFKAEQETAMKKLQEARESEGKELVLRTE 1406
>SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 83 EKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
E+E + + + T A S + +NRA++ I TA DPL G A
Sbjct: 42 EREHQITTIASLPTIATLPAGHHTAESIVETINRAESEILTAKLDPLTGKIA 93
>SB_38422| Best HMM Match : Baculo_PEP_C (HMM E-Value=7)
Length = 139
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 83 EKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
E+E + + + T A S + +NRA++ I TA DPL G A
Sbjct: 42 EREHQMTTIASLPTIATLPAGHHTAESIVETINRAESEILTAKLDPLTGKIA 93
>SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +2
Query: 143 NRRAQTSADDVVNRADANISTAFSDPLP---GSSAPRYMYESSESDTYMEPARHTAEHYT 313
N+ A T AD + ++ T F G S ++ + +DT+ + R+ H T
Sbjct: 151 NKHADTHADAHADTLQTHMQTRFKHACRRTCGHSTDTHV--DAHADTHADTCRYAGRHVT 208
Query: 314 DQDKDYNAAYTADEY 358
D D +A AD +
Sbjct: 209 DTQADTHADTQADTH 223
>SB_7603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 257 SSESDTYMEPARHTAEHYTDQDKDYNAAYTADEYNSLVRTVLLRLIEKALATLT 418
S ++ + P TA DQ+K NAA A E + T L+ L E+ T+T
Sbjct: 65 SHSNNGLLSPVMLTAWRERDQEKRINAACRAYECDPTSPTALILLAEEKAQTIT 118
>SB_59170| Best HMM Match : RVT_1 (HMM E-Value=0.13)
Length = 679
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 80 FEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
FE+E + + + A S + +NRA + I TA DPL G A
Sbjct: 41 FEREHQITTIASLPPIATLPAGHHTAASIVETINRAKSQILTAKLDPLTGKIA 93
>SB_34381| Best HMM Match : Flagellin_IN (HMM E-Value=5.7)
Length = 156
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 83 EKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
++E + + A A R S + +NRA++ I TA DPL G A
Sbjct: 64 KREHQITTISALPPIATLPAGHRTAESIVETINRAESKILTAKLDPLTGEIA 115
>SB_30286| Best HMM Match : DUF321 (HMM E-Value=1.2)
Length = 237
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 80 FEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
FE+E + + A A S + +NRA++ + T DPL G A
Sbjct: 41 FEREHQITTIAALPPIATLPAGHHTAESIVETINRAESKVLTTKLDPLTGKIA 93
>SB_21986| Best HMM Match : Flagellin_IN (HMM E-Value=8.3)
Length = 179
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 80 FEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
FE+E + + + A S + +NRA + I TA DPL G A
Sbjct: 41 FEREHQITTIASLPPIATLPAGHHTAASIVETINRAKSQILTAKLDPLTGKIA 93
>SB_15041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 80 FEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
FE+E + + + A S + +NRA++ I T+ DPL G A
Sbjct: 41 FEREHQITTIASLSPIATLPAGHHTAESIVETINRAESEILTSKLDPLTGKIA 93
>SB_33959| Best HMM Match : Herpes_US9 (HMM E-Value=2)
Length = 363
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 122 TAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
T A+ L S + +NRA++ I TA DPL G A
Sbjct: 49 TIASLLSRHHTAESIVETINRAESKILTAKLDPLTGKIA 87
>SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)
Length = 603
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +2
Query: 179 NRADANISTAFSDPLPGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNAAYTADEY 358
N +++ S++ SDP G S+PR D + + D DK A Y
Sbjct: 132 NGKNSSTSSSISDPSSGESSPRSESSKKTMDRNGSGDKRKRRQHLDGDKS-TKDELAIYY 190
Query: 359 NSLVRTVLLRLIEK 400
+ VR +L ++ EK
Sbjct: 191 DEQVRPLLQQMEEK 204
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 8 EECYVKIDRLFKESIKKIMDDTEAFEKEQEAERLRAEQTAA-NALLNRRAQTSAD 169
+EC + R +ES+KK+ D++++ E +QE R E AA +L+ T D
Sbjct: 4617 KECVTWLSRC-EESLKKLEDESQSSELQQERIRTIQEGIAALKSLIGNLEDTGHD 4670
>SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)
Length = 540
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +2
Query: 20 VKIDRLFKESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQTSA-DDVVNRAD-A 193
++I RL ++ I + ++++ ++E+EAER+R LL A+ A D+ +++ D
Sbjct: 398 LEILRLEEQKIAEEKEESKKRKQEEEAERVRKAAAETRELLIYEAEAIAVDEEISKKDWE 457
Query: 194 NISTAFSDP 220
++ A +P
Sbjct: 458 YVNKAIENP 466
>SB_751| Best HMM Match : rve (HMM E-Value=7.5e-12)
Length = 338
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +2
Query: 386 RLIEKALATLTNRLHI----TTIDQLKKFRDYLNSDADAGEFQIFLNQEDCVMLKN 541
+LI K +AT+ N+ HI T D L +RD + +++ +N+ED + +N
Sbjct: 157 KLINK-IATIANQEHIDVHKATYDMLSAYRDTPHPATKKTPYELMMNREDREIRRN 211
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 347 QCTPRCSPCPDRCNVRRYVGRVPCTC 270
+CTP +PC +R G CTC
Sbjct: 1020 ECTPGNNPCKNRATCSNLHGTYTCTC 1045
>SB_6358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 83 EKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPG 229
E+EQ+ + + A S + +NRA++ I TA DPL G
Sbjct: 42 EREQQITTIASLPPIATLPAGHHTAESIVETINRAESKILTAKLDPLTG 90
>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 856
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 272 TYMEPARHTAEHYTDQDKDYNAAYTADEYNSL 367
T + A+ E Y D+D D++ YT NS+
Sbjct: 314 TVFQSAKQVHEVYNDEDSDFDTFYTMGVVNSI 345
>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
Length = 908
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 83 EKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
E+E + + A A S + +NRA++ I TA DPL G A
Sbjct: 806 EREHQITTISALPPIATLPAGHHMAESIVETINRAESKILTAKLDPLTGKIA 857
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/64 (18%), Positives = 28/64 (43%)
Frame = +2
Query: 32 RLFKESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAF 211
R+ + +++ + +KEQ ++ +E T + R A++ +D N+ T
Sbjct: 433 RMARAGARQLFTKEKFCDKEQHSDEADSETTRKKKVYKSRPLQKAEEKEKESDGNVDTEM 492
Query: 212 SDPL 223
D +
Sbjct: 493 EDEM 496
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 23 KIDRLFKESIKKIMDDTEAFEKEQEAERLRAEQ 121
++++ KE KK++ + E EKE++ ERLR ++
Sbjct: 930 QLEKEKKEKEKKLLIEKEKREKEKQKERLREKE 962
>SB_8313| Best HMM Match : Tim17 (HMM E-Value=1.3)
Length = 369
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 83 EKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSA 238
E+E + + A A S + +NRA++ I TA DPL G A
Sbjct: 149 ERELQITTIAALPPVATLPAGHHTAESIVETINRAESEILTAKLDPLTGKIA 200
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 203 TAFSDPLPGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNAAYTADEYNS 364
T + PL G++ Y ++ E +Y E Y + +YN Y AD S
Sbjct: 662 TVHNPPLNGNNYHGY-HDDVEIGSYSPDTNSNEEQYNENGFEYNGHYGADHQGS 714
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,353
Number of Sequences: 59808
Number of extensions: 372225
Number of successful extensions: 2857
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 2699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2846
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -