Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c12
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     28   0.077
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.54 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.54 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   8.9  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   8.9  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 0.077
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 336 SQYASLNIKRGVGLVASAGGPEKPRSVTTTSGKVTLEDLEG 458
           SQ A+LN       VASA GP +  S+++T  +  L +++G
Sbjct: 261 SQQAALNYSTLASAVASANGPSQDPSISST--ETLLRNIQG 299


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 544 ISAPGLFQGLSSIVSILNSKAGTPLILPGPSKS 446
           IS+PG   GLSS    L S  G  ++LP PS S
Sbjct: 681 ISSPGALSGLSS----LTSPGG--MVLPSPSTS 707



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 225 EVTREDQNGDADSQENGXXXXXXXXXVKVTIGEIKSGSQYAS-LNIKR 365
           +V +++ +G+ + + +          + +T  E KSG  Y+S  N+ R
Sbjct: 19  KVFKDEGDGEDEKRSSENLTEEKSSLIDLTESEEKSGGSYSSNKNVSR 66



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 45  GDENDDNWLYGDSGGDANQESTEETQEVQKS 137
           G+++DDN     S GDA+    ++ + + +S
Sbjct: 650 GNQSDDNLGSCGSMGDAHTPPEDDAESLNQS 680


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 544 ISAPGLFQGLSSIVSILNSKAGTPLILPGPSKS 446
           IS+PG   GLSS    L S  G  ++LP PS S
Sbjct: 573 ISSPGALSGLSS----LTSPGG--MVLPSPSTS 599



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 45  GDENDDNWLYGDSGGDANQESTEETQEVQKS 137
           G+++DDN     S GDA+    ++ + + +S
Sbjct: 542 GNQSDDNLGSCGSMGDAHTPPEDDAESLNQS 572


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 66  NYHRFHRPVWSQ 31
           NYHR HR +  Q
Sbjct: 400 NYHRVHRKIMVQ 411


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 66  NYHRFHRPVWSQ 31
           NYHR HR +  Q
Sbjct: 125 NYHRVHRKIMVQ 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,271
Number of Sequences: 336
Number of extensions: 3014
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)