Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c12
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    80   2e-16
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   2.4  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   4.1  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   4.1  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   7.2  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   9.5  

>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 34/69 (49%), Positives = 48/69 (69%)
 Frame = +3

Query: 411 SVTTTSGKVTLEDLEGPGSINGVPALEFNIDTIEDKPWNKPGADISDYFNYGFNEVTWSA 590
           S   T+ KV   D++   +I+G    E ++++ +DKPW KPGADISDYFNYGF+E TW+A
Sbjct: 97  STAETAPKV---DIDAVPTIDGKNIFEIDLESFDDKPWRKPGADISDYFNYGFDEFTWAA 153

Query: 591 YCERQRRMR 617
           YC +Q  +R
Sbjct: 154 YCAKQTTLR 162


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 243 DPRALPQQNAHHLIPNRYYLPLHLDFLRQHHRRRRPIFVLLEF 115
           +P     Q +  L    Y+LP++ DF+R+  ++ RP  + + F
Sbjct: 515 NPNIATIQTSKGLADKVYFLPVNADFVRKVIKQERPDSIYVTF 557


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 511 SIVSILNSKAGTPLILPGPSKSSNVTFPLVVVTERGFSGPP-ADATKPT 368
           SI  ILNS   +PL LP P      T P+ +        PP A+++K T
Sbjct: 154 SIPPILNSSDRSPLSLPTPYPVQYSTQPVSLPQPIAAPAPPSAESSKST 202


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 475 PLILPGPSKSSNVTFPLVVVTERGFSGPPADATKPTPLFMFR 350
           P+  P  S  +  +   +    RGF   P +A K  P  M+R
Sbjct: 300 PIFYPNSSSPNFFSLSEIPFNRRGFRYSPCEAAKDLPNVMYR 341


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 451 WKGQEVLMEFPLWNSIL 501
           +K QE+L E  +WNS+L
Sbjct: 299 YKLQEILFEMDIWNSLL 315


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 270 SLGYQRHHFDPRALPQQNAH-HLIPNRYYLP 181
           S GY + HF    L  +N H   +P  Y +P
Sbjct: 235 SSGYPQQHFSQPELQNRNVHLETVPESYPVP 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,334
Number of Sequences: 5004
Number of extensions: 49951
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)