Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8c12
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 58 6e-09
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743... 50 2e-06
06_02_0237 + 13341469-13342259,13342839-13343223,13343314-133434... 32 0.35
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 30 1.4
07_03_1547 + 27623945-27625612 30 1.9
04_04_1184 + 31558678-31558707,31559485-31559644,31559732-315603... 30 1.9
11_01_0549 - 4354050-4354069,4354175-4354367 29 4.3
03_04_0133 + 17585278-17585282,17586257-17586386,17587444-175875... 28 5.6
12_01_0701 - 5968970-5969353 28 7.5
05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878 28 7.5
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308... 28 7.5
11_04_0429 + 17646438-17646671 27 9.9
01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605... 27 9.9
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 27 9.9
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Frame = +3
Query: 492 FNID---TIEDKPWNKPGADISDYFNYGFNEVTWSAYCERQRRMRINET 629
F+ID T E+KPW PGADISD+FN+G ++ W YC++ ++R+ T
Sbjct: 329 FDIDVDTTFEEKPWKYPGADISDFFNFGLDDEKWKDYCKQLDQLRLEST 377
>03_02_0762 -
10968888-10969466,10972522-10974175,10974277-10974359,
10974435-10974533,10974620-10974706,10974782-10974838,
10974939-10975065,10975344-10975465,10975685-10975732,
10975867-10976268
Length = 1085
Score = 49.6 bits (113), Expect = 2e-06
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +3
Query: 489 EFNIDTIEDKPWNKPGADISDYFNYGFNEVTWSAYC 596
+ +I+ ++KPW + G D++DYFN+G +E +W YC
Sbjct: 195 DVDIEAFQEKPWRQHGVDLTDYFNFGLDEESWRKYC 230
>06_02_0237 +
13341469-13342259,13342839-13343223,13343314-13343427,
13343517-13344011
Length = 594
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 360 KRGVGLVASAGGPEKPRSVTTTSGKVTLEDLEGPGSINGVPA 485
KR G+ A+ G P PRS T +V + EG +ING PA
Sbjct: 495 KRNTGVRATGGAPT-PRSYWTVLYEVAETEAEGQVNINGAPA 535
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 24 TAIETTPGDENDDNWLYGDSGGDANQESTEETQE 125
T + G+++DD W DSG + +E ++ +E
Sbjct: 34 TPTPSDDGEDSDDGWAVSDSGSEEEEEEYDDEEE 67
>07_03_1547 + 27623945-27625612
Length = 555
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 219 NAHHLIPNRYYLPLHLDFLRQHHRRRRPIFVLLEFPQW 106
N +H N LPL F+ +H RRR +FV+LE+ W
Sbjct: 225 NVYHEF-NDGILPL---FVTSNHLRRRVVFVILEYHDW 258
>04_04_1184 +
31558678-31558707,31559485-31559644,31559732-31560394,
31560512-31560956,31561090-31561171,31561319-31561534
Length = 531
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 490 SKAGTPLILPGPSKSSNVTFPLVVVTERGFSGPPADATKPTPLF 359
S+ GTPL P++S N + P V R + P D T P F
Sbjct: 310 SRTGTPLGSMTPTRSPNCSIPSTPVGGRSTASPGDDNTDDGPYF 353
>11_01_0549 - 4354050-4354069,4354175-4354367
Length = 70
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 366 GVGLVASAGGPEKPRSVTTTSGKVTLEDLEGPGSING 476
G G V S GGP++ R VTTT G+ + G GS+ G
Sbjct: 11 GCGSV-SGGGPQQRRGVTTTRGRRSA--TAGCGSVGG 44
>03_04_0133 +
17585278-17585282,17586257-17586386,17587444-17587591,
17587661-17587849,17587999-17589150,17589303-17589466
Length = 595
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 270 SLGYQRHHFDPRALPQQNAHHLIPNRYYLPLHLDFLRQHHRRRRPIFV 127
SLG HF PRALP + + L+ YY + + R R P+ V
Sbjct: 381 SLGKNFWHFLPRALPGKTSMELV--SYYFNVFMLRKRAQQNRSEPLHV 426
>12_01_0701 - 5968970-5969353
Length = 127
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 213 HHLIPNRYYLPLHLDFLRQHH 151
H L+P+R+ LHL +R+HH
Sbjct: 72 HRLLPSRHLPLLHLHAIRRHH 92
>05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878
Length = 402
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 21 ETAIETTPGDENDDNWLYGDSGGDANQESTEETQEVQKSAD 143
+TA+ PGD + D GD GD + + EE + +D
Sbjct: 317 DTALANLPGDGDGDG--DGDGDGDGDDDDDEENDDNDSDSD 355
>03_02_0924 +
12429764-12430120,12430562-12430637,12430803-12430849,
12431850-12431962,12432056-12432129,12432258-12432353,
12432440-12432559,12432660-12432893,12433486-12433634,
12434145-12434301,12434387-12434542,12435359-12435735,
12435871-12436020,12437071-12437253,12437440-12437643,
12437869-12437975,12438253-12438406,12438796-12438917,
12439541-12439787
Length = 1040
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 15 MAETAIETTPGDENDDNWLYGDSGGDANQESTEETQE 125
M E E GDE+DD+ Y D G+ +++ E E
Sbjct: 62 MGEEDDEEEDGDEDDDDEEYSDEEGEDDEDDEGEEDE 98
>11_04_0429 + 17646438-17646671
Length = 77
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 399 EKPRSVTTTSGKVTLEDLEGPGSINGVPALEFNIDTIEDKPWNK 530
+K +VTTT G T+ + G NG AL I+ +ED W++
Sbjct: 13 QKGGAVTTTPGAKTMATVAPCGLRNGRSALARRIEDVED--WDR 54
>01_06_1105 -
34559694-34559852,34560298-34560312,34560451-34560522,
34560695-34561549
Length = 366
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +3
Query: 306 KVTIGEIKSGSQYASLNIKRGVGLVASAGGPEKPRSVTTTSGKVTLED 449
K T+ E+ G Q A KR GG + R T G+VTLED
Sbjct: 95 KKTVDEVWKGIQAAP---KRNAETGGGGGGGRRRRERQPTLGEVTLED 139
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +3
Query: 477 VPALEFNI-DTIEDKPWNKPGADISDYF----NYGFNEVTWSAYCER 602
VP +E + D D+PW G+D++D +YG +E+ + +R
Sbjct: 25 VPEIEQKVLDATSDEPWGPHGSDLADIARATKSYGDSEIIMNVLWQR 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,620,884
Number of Sequences: 37544
Number of extensions: 336600
Number of successful extensions: 1102
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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