Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8c12
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 1e-19
SB_33586| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-36) 31 0.62
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 31 0.62
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 1.9
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 29 3.3
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84) 29 3.3
SB_13530| Best HMM Match : RCSD (HMM E-Value=3.1) 29 3.3
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 29 4.4
SB_24398| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12) 28 7.6
>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 93.9 bits (223), Expect = 1e-19
Identities = 49/132 (37%), Positives = 73/132 (55%)
Frame = +3
Query: 228 VTREDQNGDADSQENGXXXXXXXXXVKVTIGEIKSGSQYASLNIKRGVGLVASAGGPEKP 407
++ ED+ D D ++ V+VTIGEI + + V G
Sbjct: 1 MSNEDEEDDDDDDDDDDDD------VQVTIGEINTSATGYGAPYATPVNWNFKGGAAAS- 53
Query: 408 RSVTTTSGKVTLEDLEGPGSINGVPALEFNIDTIEDKPWNKPGADISDYFNYGFNEVTWS 587
T +G T+ D+ G++NGV E+++++ E+KPW +PGADI+DYFNYGF E TW
Sbjct: 54 -KATPGAGSKTV-DVNAEGTVNGVGIYEYDLESSEEKPWRQPGADITDYFNYGFTEDTWK 111
Query: 588 AYCERQRRMRIN 623
YCE+QRRMR++
Sbjct: 112 QYCEKQRRMRMD 123
>SB_33586| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-36)
Length = 355
Score = 31.5 bits (68), Expect = 0.62
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +3
Query: 384 SAGGPEKPRS--VTTTSGKV--TLEDLEGPGSINGVPALEFNI-DTIEDKPWNKPGADIS 548
S E P S + + +GK T+ L G ++ +P L F I DT P N I+
Sbjct: 254 SRSSQENPESNNICSLNGKARKTVTLLVGTFAVCMIPFLVFQIYDTFTMSPTNHQWFSIT 313
Query: 549 DYFNYGFNEVTWSAYCERQRRMRI 620
+ ++ + V W+ YC R ++
Sbjct: 314 KWVSHINSAVNWAIYCYSNREWKV 337
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 31.5 bits (68), Expect = 0.62
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = -1
Query: 303 RHRCRPSQSHRSLGYQRHHFDPRALPQQNAHHLIPNRYYLPLHLDFLRQHHRRRRPIFVL 124
+HR Q+ RS QRH + LP N H P ++++ + L + HR+ RPI V+
Sbjct: 773 QHRMGNRQNERS-SPQRHEEGQQQLPGGN-HS--PGQHHMQQRREALPEQHRQGRPIPVM 828
Query: 123 LEFPQ 109
+ P+
Sbjct: 829 RQHPR 833
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 327 KSGSQYASLNIKRGVGLVASAGGPEKPRSVTTTSGKVTLE 446
+SGS+ +N+ + + S+ P S TTT+ K TLE
Sbjct: 345 QSGSEGTPINLNIDLPSIISSDAPTMASSTTTTTSKTTLE 384
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 231 TREDQNGDADSQENGXXXXXXXXXVKVTIGEIKSGSQYASLNIKRGVGLVASAGGPEKPR 410
T E +NGDA S+ V T+GE K+ + I + + A G P KP
Sbjct: 1894 TTETKNGDATSKTTTVKKTTSVAGVTKTVGEAKTSAHPPKTTITKR-PMDAKDGKPGKPA 1952
Query: 411 SVTT 422
++ T
Sbjct: 1953 TMAT 1956
>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
Length = 944
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 231 TREDQNGDADSQENGXXXXXXXXXVKVTIGEIKSGSQYASLNIKRGVGLVASAGGPEKPR 410
T E +NGDA S+ V T+GE K+ + I + + A G P KP
Sbjct: 752 TTETKNGDATSKTTTVKKTTSVAGVTKTVGEAKTSAHPPKTTITKR-PMDAKDGKPGKPA 810
Query: 411 SVTT 422
++ T
Sbjct: 811 TMAT 814
>SB_13530| Best HMM Match : RCSD (HMM E-Value=3.1)
Length = 215
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 30 IETTPGDENDDNWLYGDSGGDANQESTEETQE 125
+E +E+D+ + G++GGD N +S ET++
Sbjct: 174 VENEENNEDDEEEVSGENGGDGNIKSQVETEK 205
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 216 AHHLIPNRYYLPLHLDFLRQHHRRRRPIFVLLEFPQWILG*HLRQNPRITNYHR 55
+ HL +R+ L +H +HH RP+ P L L PR++N+HR
Sbjct: 383 SRHLHYHRFRLSIHHHPSSRHHHCHRPLLFNHLRPSRCL---LYHRPRLSNHHR 433
>SB_24398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 303 VKVTIGEIKSGSQYASLNIKRGVGLVASAGGPEKPRSVTTTS--GKVTLE 446
V +T+G + + +ASL I +G+G+++ G E ++ T G T E
Sbjct: 102 VAMTLGHVTTSQTFASLCIAKGLGVMSGKVGVESFFTIETKDRFGNTTFE 151
>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
Length = 979
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 300 HRCRPSQSHRSLGYQRHHFDPRALPQQNAHHLIPN 196
H RP++ H S G +R + + + Q A H + N
Sbjct: 604 HEKRPNRLHESYGNRRKNISNKLISHQEAFHAMQN 638
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,146,290
Number of Sequences: 59808
Number of extensions: 404196
Number of successful extensions: 1325
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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