Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c12
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    85   4e-17
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z79758-7|CAD98730.1|  763|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z79758-6|CAD98729.1|  673|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z79758-5|CAB54321.1|  687|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z79758-4|CAB02133.2|  790|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z79758-3|CAB02134.1|  689|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z70284-14|CAA94285.4|  422|Caenorhabditis elegans Hypothetical p...    28   6.7  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    27   8.8  
AL034488-12|CAD31697.1|  450|Caenorhabditis elegans Hypothetical...    27   8.8  

>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 33/62 (53%), Positives = 45/62 (72%)
 Frame = +3

Query: 447 DLEGPGSINGVPALEFNIDTIEDKPWNKPGADISDYFNYGFNEVTWSAYCERQRRMRINE 626
           DL+   +IN  P  + ++  +ED+PW KPGADI+DYFNYGF E TW+ YCERQ+++RI  
Sbjct: 120 DLDTTATINDKPIYDLDLAQMEDRPWRKPGADITDYFNYGFTEETWNLYCERQKKLRIEF 179

Query: 627 TG 632
            G
Sbjct: 180 AG 181


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +1

Query: 112 RKLKKYKNRPTSSVVLTKKIKMKRK 186
           RK++K K RPT+  V+ KK++M++K
Sbjct: 309 RKIEKEKPRPTTENVVLKKVEMEKK 333


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 391 PADATKPTPLFMFRLAYCDPD 329
           P DA KP P      A+CDPD
Sbjct: 472 PCDANKPIPSQFSTYAFCDPD 492


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 381 ASAGGPEKPRSVTTTSGKVTLEDLEGPGSINGVPALEFNIDTIEDKPWNKPGADIS 548
           ++  GP      +TTSG  T+ D  GP + +G         +    P   PG+ IS
Sbjct: 410 STTSGPTTTSEPSTTSGS-TVSDTSGPSTTSGPSTTLGTTQSTTSGPSTTPGSTIS 464


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 410 TRFLRSPCRCYQANS 366
           TR LRS C+CY AN+
Sbjct: 596 TRILRSKCKCYDANA 610


>Z79758-7|CAD98730.1|  763|Caenorhabditis elegans Hypothetical
           protein W10D5.3f protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 288 PSQSHRSLGYQRHHFDPRALPQQNAHHLIPNRYYLPLHLDFLRQHH 151
           PS+S  S     HH+  +   Q   H+L+  +     H    +QHH
Sbjct: 113 PSRSGASNHLVNHHYQQQQQQQPQPHNLLHQQMMASHHSHLQQQHH 158


>Z79758-6|CAD98729.1|  673|Caenorhabditis elegans Hypothetical
           protein W10D5.3e protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 288 PSQSHRSLGYQRHHFDPRALPQQNAHHLIPNRYYLPLHLDFLRQHH 151
           PS+S  S     HH+  +   Q   H+L+  +     H    +QHH
Sbjct: 113 PSRSGASNHLVNHHYQQQQQQQPQPHNLLHQQMMASHHSHLQQQHH 158


>Z79758-5|CAB54321.1|  687|Caenorhabditis elegans Hypothetical
           protein W10D5.3d protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 288 PSQSHRSLGYQRHHFDPRALPQQNAHHLIPNRYYLPLHLDFLRQHH 151
           PS+S  S     HH+  +   Q   H+L+  +     H    +QHH
Sbjct: 111 PSRSGASNHLVNHHYQQQQQQQPQPHNLLHQQMMASHHSHLQQQHH 156


>Z79758-4|CAB02133.2|  790|Caenorhabditis elegans Hypothetical
           protein W10D5.3c protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 288 PSQSHRSLGYQRHHFDPRALPQQNAHHLIPNRYYLPLHLDFLRQHH 151
           PS+S  S     HH+  +   Q   H+L+  +     H    +QHH
Sbjct: 113 PSRSGASNHLVNHHYQQQQQQQPQPHNLLHQQMMASHHSHLQQQHH 158


>Z79758-3|CAB02134.1|  689|Caenorhabditis elegans Hypothetical
           protein W10D5.3a protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 288 PSQSHRSLGYQRHHFDPRALPQQNAHHLIPNRYYLPLHLDFLRQHH 151
           PS+S  S     HH+  +   Q   H+L+  +     H    +QHH
Sbjct: 113 PSRSGASNHLVNHHYQQQQQQQPQPHNLLHQQMMASHHSHLQQQHH 158


>Z70284-14|CAA94285.4|  422|Caenorhabditis elegans Hypothetical
           protein K07F5.14 protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 21  ETAIETTPGDENDDNWLYGDSGGDANQESTEETQEVQKSAD 143
           E+   + P  + DD +   DS  D N E + E QE++   D
Sbjct: 119 ESRFNSDPRFKLDDKFAESDSDEDGNMEQSSEKQEMKLEKD 159


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter than
            wild-typeprotein 6 protein.
          Length = 1254

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 417  TTTSGKVTLEDLEGPGSINGVPALEFNIDTIE 512
            TT     TL ++ GP  + G P  E  I+T+E
Sbjct: 972  TTPIEATTLNEVTGPAFVTGAPVDETTINTLE 1003


>AL034488-12|CAD31697.1|  450|Caenorhabditis elegans Hypothetical
           protein Y54G11A.14 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 54  NDDNWLYGDSGGDANQESTEETQEVQKSADVV 149
           +DD  + GD   +  +E  EE +E +  ADVV
Sbjct: 210 DDDEGVMGDDDEEEEEEEEEEEEEEEDVADVV 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,917,083
Number of Sequences: 27780
Number of extensions: 288199
Number of successful extensions: 936
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)