Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8c11
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 194 9e-50
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 62 4e-10
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 59 5e-09
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 37 0.016
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 37 0.021
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 34 0.11
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_20893| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-23) 28 7.3
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 28 7.3
SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095) 28 9.6
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 194 bits (472), Expect = 9e-50
Identities = 101/168 (60%), Positives = 124/168 (73%), Gaps = 4/168 (2%)
Frame = +1
Query: 127 SLHKSYQLSRFY--AKDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPK 300
SL + + SRF K+++FGA+ RA MLQGVD LADAVAVT+GPKG+NVI+EQS+G PK
Sbjct: 45 SLGEGFSTSRFQNSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPK 104
Query: 301 ITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 480
ITKDGVTVAK +ELKDK+QNIGA+LVQ+VANNTNEEAGDGTTTATVLAR+IA EGF +S
Sbjct: 105 ITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVS 164
Query: 481 KGANPIEIRR-GVMLAVDAVKEKLKGMSKP-VTTPEEIAQVATISANG 618
KGANP E+ + DA M + + P ++ + A A G
Sbjct: 165 KGANPQEVSSLENAMGYDAANNTYVDMIQAGIIDPTKVVRTAITDAAG 212
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 62.5 bits (145), Expect = 4e-10
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 5/165 (3%)
Frame = +1
Query: 211 GVDILADAVAVTMGPKGRNVILEQSW--GSPKITKDGVTVAKGVELKDKFQNIGAKLVQN 384
G + D V T+GPKG + IL+ G+ ++T DG T+ K + + N AK++
Sbjct: 28 GAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGI----DNPAAKILVE 83
Query: 385 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMSK 564
++ ++E GDGTT+ TVL + KE + +S +P I G +V A ++ L+ +
Sbjct: 84 LSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAV 143
Query: 565 PVTTPEEIAQVATISANGDTAIGKLIA---DAMKKVGRDGVITVK 690
++ E + ++ T K++ D K+ D V+ +K
Sbjct: 144 DHSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLK 188
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 58.8 bits (136), Expect = 5e-09
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Frame = +1
Query: 223 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 402
+A + ++GPKG + ++ G +T DG T+ +E+ + AKL+ ++ + +
Sbjct: 42 VASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQI----AKLMVELSKSQD 97
Query: 403 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMSK--PVTT 576
E GDGTT VLA A+ + + + G +PI I G LA E + ++ PV
Sbjct: 98 NEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIADNFPVDK 157
Query: 577 PEEIAQVATISANGDTAIGKLIADAMKKVGRDGVITVKD 693
+ + + T + I + ++ D V++V D
Sbjct: 158 DNKESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVAD 196
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 38.7 bits (86), Expect = 0.005
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Frame = +1
Query: 331 GVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRR 510
GV+ + Q+ A L+ VA ++ GDGTT+ ++ + K+ +S+G +P +
Sbjct: 165 GVQ-NSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTE 223
Query: 511 GVMLAVDAVKEKLKGMS-KPVTTPEEIAQVATISANGDTAIGKLIADAMKKVGRDGVITV 687
G +A E L+ + + + VA S T + +AD + +V D V+T+
Sbjct: 224 GFEVAKKKALEVLEEVKVSREMDRDTLINVAKTSLR--TKVRTELADLLTEVVVDAVLTI 281
Query: 688 KDGKTLTD 711
+ K D
Sbjct: 282 RKPKKPID 289
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 37.1 bits (82), Expect = 0.016
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +1
Query: 400 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMSKPVTTP 579
++E GDGTT+ TVLA + KE + +S +P I G +V A ++ L+ + ++
Sbjct: 7 DDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSD 66
Query: 580 EEIAQVATISANGDTAIGKLIA---DAMKKVGRDGVITVK 690
E + ++ T K++ D K+ D V+ +K
Sbjct: 67 PEKFRDDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLK 106
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 166 KDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTV 324
KD ++R + +ADA+ ++GPKG + +++ G IT DG T+
Sbjct: 17 KDKEKPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +1
Query: 301 ITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 480
+T DG + + +++K AK + ++ +EE GDGTT+ +LA +
Sbjct: 1 MTNDGNAILREIQVKHP----AAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLE 56
Query: 481 KGANPIEIRRGVMLAVDAVKEKLK 552
+ +P +I LA+D + + LK
Sbjct: 57 QQMHPTQIIAAYRLAMDDMIDILK 80
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 205 LQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQN 384
+ +ADAV T+GP+G + ++ G I+ DG T+ + L D + AK + +
Sbjct: 661 IDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI---INLLD-IVHPAAKTLVD 716
Query: 385 VANNTNEE 408
+A + + E
Sbjct: 717 IAKSQDAE 724
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 343 KDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 522
K + ++ AK + ++ +EE GDGTT+ +LA + + +P +I L
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267
Query: 523 AVDAVKEKLK 552
A+D + + LK
Sbjct: 268 AMDDMIDILK 277
>SB_20893| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-23)
Length = 435
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 672 IPTYLLHCISNELADCRVPVSRYGSYLCDFFGCCN 568
+PT+L+H E D V + RY +L +FG N
Sbjct: 214 LPTHLMHLFITERRDILVSLPRYLPFLLFWFGYFN 248
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 436 VLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMSKPVTTPEE 585
V +R + KE EK+SK +P E GV + K + T+PEE
Sbjct: 350 VKSRRVTKEQEEKLSKRPSPGERMGGVAKEQEGNLSKRPSPGESTTSPEE 399
>SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095)
Length = 433
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 242 LQWVQKVETLFWNNLGGP---RRSQKTA*QLPKVLNSRISSRTSVLS*YKT*L--IIPT 403
L WV + ++F+NN GG RS+ +P+ L+ ++S +S+ +K L +PT
Sbjct: 289 LSWVNQSFSVFYNNTGGSDTIPRSRADGWYVPRRLSKKLSYLSSIFLKHKVFLETAVPT 347
>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2021
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 355 QNIGAKLVQNVANNTNEEAG-DGTTTATVLARAIAKEGFEKISKGANPIEIRRG 513
Q + LV N N+ + G DG+T T+ +A+ GF S N + G
Sbjct: 363 QGMNLSLVVNTTTNSVQLTGLDGSTNYTIAVQAVTSRGFGTPSLWVNATTKQEG 416
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,640,617
Number of Sequences: 59808
Number of extensions: 421832
Number of successful extensions: 991
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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