Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c10
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        33   0.12 
SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_41385| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_45687| Best HMM Match : WD40 (HMM E-Value=4.5e-16)                  29   3.4  
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)                   28   4.5  
SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 349 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDF 465
           V  CP C  V  +E+ + E+I+MHK  N  + + C   F
Sbjct: 247 VYKCPLCVTVCENELILQEHIKMHKRKNKHYCNYCAEVF 285



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 352  VLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCP 456
            + CP+C     SE  +  ++  HK++ +K   R P
Sbjct: 1371 IACPRCEKSFRSEAQLKRHLSEHKDYGSKSRPRSP 1405


>SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 349 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDF 465
           V  CP C  V  +E+ + E+I+MHK  N  + + C   F
Sbjct: 179 VYKCPLCVTVCENELILQEHIKMHKRKNKHYCNYCAEVF 217


>SB_41385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 205 ASTLRTTWSASEITINLTNW*KNIDMLRSIIRRFKSTNNLSKKPSD 342
           A+  +++WS  EIT  + N   N+  L+ +   F + NNL++ P D
Sbjct: 24  AAGKKSSWSELEITAPIRNLSPNLWQLQFLTALFLNDNNLTRIPPD 69


>SB_45687| Best HMM Match : WD40 (HMM E-Value=4.5e-16)
          Length = 301

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 255 DKLVKKY*HVAINHTTFQEYKQSQQKAF 338
           DK  K    ++INH++  +Y+QSQ+++F
Sbjct: 5   DKTSKTLKSISINHSSTNDYQQSQRQSF 32


>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
          Length = 290

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -2

Query: 257 VKFIVISLADHVVRSVLAHFICFKSFVI 174
           + F+V+++AD +V ++  +F CF+  ++
Sbjct: 168 LSFVVLAIADRIVSNIRYYFACFQELLM 195


>SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +3

Query: 207 QHTTYDVVGKRDYNKFDKLVKKY*HVAINHTTFQEYKQ---SQQKAFRSLCSVMSKVLFC 377
           + TT+ V+G R   K+     +  H     T  QE  Q   +Q +     CS M+ V FC
Sbjct: 141 EFTTWSVIGSRQKAKYQMNESEINHATDTGTLKQETSQATANQDRHMLRKCS-MNMVEFC 199

Query: 378 DV 383
           D+
Sbjct: 200 DL 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,103
Number of Sequences: 59808
Number of extensions: 276211
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)