Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c09
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    37   0.003
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    28   1.2  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    28   1.6  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    28   1.6  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    27   2.1  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    27   2.7  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   4.8  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.3  

>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
 Frame = +3

Query: 396 VQQFIQQTIRRDPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCT 575
           ++Q+ + T+    S +EA+ K+P+  D   W   +   F  ++N L   +   C   +C 
Sbjct: 26  LRQYAEATLGSG-SLMEAV-KLPKGEDLNEWIAMNTMDFYTQINMLYGTITEFCTAASCP 83

Query: 576 QMTATEQWIFLCAAHK---TPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNI 725
           QM A   + +     K    P    A DY  + LD     L+  K FP+ + +
Sbjct: 84  QMNAGPSYEYYWQDDKIYTKPTRMSAPDYINNLLDWTQEKLDDKKLFPTEIGV 136


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 615 AHKTPKECPAIDYTRHTLDGAACLLNSNK 701
           A K PK   +IDYT +  D    LLN+ K
Sbjct: 883 AEKLPKHSTSIDYTLYAKDDPLYLLNTTK 911


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 327 RVDCVGVFELRRSFLLVEWRKDTFVCLNWFEC*QASD 217
           +V  +G+F +RR  +++ W     +C   F C ++ D
Sbjct: 221 KVISIGLFNIRREMMIIIWLLWLIICCILFGCVKSGD 257


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 327 RVDCVGVFELRRSFLLVEWRKDTFVCLNWFEC*QASD 217
           +V  +G+F +RR  +++ W     +C   F C ++ D
Sbjct: 188 KVISIGLFNIRREMMIIIWLLWLIICCILFGCVKSGD 224


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 723 CSPCLESIYCYSTSKLLHLECAVC-NQW 643
           CS C+E I+C + ++  H+ C  C N W
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGW 283


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 276 PPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDSTLAVQQFIQQ 416
           PP +  + V++LRR +   KAKD  ++P+E F   D    +   ++Q
Sbjct: 247 PPFKAPNHVELLRRIQ---KAKDVIKFPEEAFIHPDIKTLICALLKQ 290


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 386 AIHFFKGFIRPATEVLGFGAGSIASEYLNSVG 291
           A+H +K   RP T+  G    S+  +YL   G
Sbjct: 92  AMHGYKVSFRPGTDHAGIATQSVVEKYLQKKG 123


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -3

Query: 562 GLHSFCRRTAN--PLSSIQN--CLRCSYFQTPSSNTSGIFKIASRFEGSRRIV 416
           G+ S  +R+AN  P +S  N   +  S+ +  S+++S  F + S F G+ R+V
Sbjct: 448 GIKSSQQRSANASPATSPSNQASIHASFTKESSTHSSPSFTLESLFSGAPRVV 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,335
Number of Sequences: 5004
Number of extensions: 66546
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)