Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c09
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0110 + 20910084-20910187,20910255-20910303,20911334-209114...    37   0.014
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753...    35   0.057
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814...    30   1.6  
08_02_0254 - 14879724-14880635                                         29   2.8  
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140     29   2.8  
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171     29   5.0  

>03_05_0110 +
           20910084-20910187,20910255-20910303,20911334-20911442,
           20911597-20911690,20912253-20912386,20912519-20912682,
           20912818-20912889
          Length = 241

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
 Frame = +3

Query: 438 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCA- 614
           NL   +++P   D   W   +   F  ++N L   L   C PE+C  MTA  ++ +  A 
Sbjct: 67  NLREAVRLPPGEDINEWLAVNTVDFFNQVNLLYGTLAEFCTPESCPTMTAGPKYEYRWAD 126

Query: 615 --AHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRV 719
               K P E  A  Y  + +D     L+    FP ++
Sbjct: 127 GVQIKKPIEVSAPKYVEYLMDWIEGQLDDESIFPQKL 163


>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
            12775463-12775556,12775650-12775758,12776055-12776103,
            12778336-12778376,12779539-12779571,12779665-12779754,
            12780474-12780507,12781218-12781510,12781859-12782057,
            12782129-12782289,12783130-12783282,12783545-12783715,
            12783822-12783921,12784023-12784111,12784192-12784290,
            12784406-12784676,12784764-12784961,12785041-12785140,
            12785799-12785931,12786016-12786277,12787106-12787155
          Length = 1033

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
 Frame = +3

Query: 438  NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCA- 614
            NL   +++P   D   W   +   F  ++N L   L   C P TC  M+A  ++ +  A 
Sbjct: 858  NLRDAVRLPPGEDLNEWLAVNTVDFFNQVNILYGTLMEFCTPTTCPTMSAGPKFEYRWAD 917

Query: 615  --AHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRV 719
                K P E  A  Y  + +D     L+    FP ++
Sbjct: 918  GIQIKKPIEVSAPKYVEYLMDWIEVQLDDESIFPQKL 954


>01_06_0366 -
           28779899-28780543,28780813-28781076,28781165-28781431,
           28781546-28781774,28781868-28781985,28782229-28782486,
           28782585-28782858,28782950-28783475,28784289-28784527,
           28784626-28784847,28784912-28784914,28785124-28785299,
           28786147-28786201,28786288-28786557
          Length = 1181

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 344 VLGFGAGSIASEYLNSVGHFFWWNGEKILLFA*TGSNV 231
           + GFG GS+      S G  FW+ G+ I+    TG  +
Sbjct: 273 ITGFGMGSVMCVVFGSYGLAFWYGGKLIIEKGYTGGKI 310


>08_02_0254 - 14879724-14880635
          Length = 303

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/55 (25%), Positives = 20/55 (36%)
 Frame = +3

Query: 486 WKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAHKTPKECPAID 650
           W Y++L QFC       +  +N C  E   ++     W   C     P     ID
Sbjct: 224 WLYDNLNQFCGAATE-GIDSRNTCISEVARKLVTIGFWCIQCTPEDRPSMSEVID 277


>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
          Length = 695

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 327 GTKAKDFCRWPDEPFEEMDSTLAVQQFIQQTIRRDPSNLEAILKMPEV 470
           G +A D  RWP  P+  +  T    + +Q   R  P  +E +  MP +
Sbjct: 341 GVQASDPVRWPQSPWRLLQVTWDEPELLQNVKRVCPWLVELVSSMPNL 388


>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
          Length = 1054

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 295 SVISFGGMAKRYFCLLKLVRMLTS 224
           ++ISFGG  +++FC+ K V  L++
Sbjct: 644 ALISFGGTPEQHFCITKFVNQLSN 667


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,076,383
Number of Sequences: 37544
Number of extensions: 397996
Number of successful extensions: 987
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)