Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8c09
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_994| Best HMM Match : I-set (HMM E-Value=6e-15) 51 1e-06
SB_54378| Best HMM Match : Arena_glycoprot (HMM E-Value=0.71) 33 0.31
SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20) 31 0.95
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041) 29 2.9
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 29 2.9
SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20) 29 3.8
SB_10318| Best HMM Match : zf-CCHC (HMM E-Value=0.00061) 29 5.1
SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017) 28 6.7
SB_47661| Best HMM Match : zf-CCHC (HMM E-Value=0.015) 28 8.9
SB_44915| Best HMM Match : VWA (HMM E-Value=0) 28 8.9
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32) 28 8.9
>SB_994| Best HMM Match : I-set (HMM E-Value=6e-15)
Length = 189
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +3
Query: 405 FIQQTIRRDPSNLEAILKMPEVLDEGVWKYEHLRQFCM 518
+IQQ IR + N++AIL+ PE DEGVWKYEHLR + M
Sbjct: 1 YIQQQIRCNCENVDAILESPEGQDEGVWKYEHLRCYGM 38
>SB_54378| Best HMM Match : Arena_glycoprot (HMM E-Value=0.71)
Length = 699
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 411 QQTIRRDPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTAT 590
+QT++ S L I M E+ D +W++ + + ME+ G +EC PET ++
Sbjct: 311 KQTVQSKLSELRLIPGMCELFDNIIWQHTNANRGLMEIEG-----DHECTPETALKIQFL 365
Query: 591 EQWIFLCAAHK 623
C H+
Sbjct: 366 RLVHSFCDRHE 376
>SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)
Length = 1193
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 360 DEPFEEMDSTLAVQQFIQQTIRRDPSNLEAILKMPEVLDE-GVWKYEHLRQF 512
+E ++ D L F+++ +R DP+ ++AIL+MP+ D+ GV + L Q+
Sbjct: 531 EEAIQDHDKHLIA--FLERCLRVDPAKVKAILEMPDPTDKAGVQRLLGLAQY 580
>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
Length = 999
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 570 CTQMTATEQWIFLCAAHKTPKECPAID 650
CTQ+ W F+C H C A+D
Sbjct: 758 CTQVLVERLWHFMCTVHDWRLRCDAVD 784
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 236 SNQFKQTKVSFRHSTKRNDRRSSNTPTQSTRHQSQ 340
S + TK+S+R T + RSS + TQ R SQ
Sbjct: 99 SRENSSTKLSYRRETSSSSLRSSGSETQLRRESSQ 133
>SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)
Length = 956
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 306 FELRRSFLLVEWRKDTFVC 250
F L SF+LV WR TFVC
Sbjct: 93 FSLSNSFVLVLWRSVTFVC 111
>SB_10318| Best HMM Match : zf-CCHC (HMM E-Value=0.00061)
Length = 602
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 420 IRRDPSNLEAILKMPEVLDE-GVWKYEHLRQFCMELNGLAVRLQNECKP 563
+R DP+ ++AIL+MP+ D+ GV + L Q+ L+ L +E KP
Sbjct: 491 LRVDPAKVKAILEMPDPTDKAGVQRLLGLAQY---LSKFLPHLSDETKP 536
>SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)
Length = 691
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 393 PMCYPFLQRVHQASDRSPWLWCRVDCVGVFELRR 292
P FL + SDR P++ C++D F L++
Sbjct: 176 PAIDTFLMEDEEDSDRHPYVQCKIDLYDCFRLKK 209
>SB_47661| Best HMM Match : zf-CCHC (HMM E-Value=0.015)
Length = 830
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = +1
Query: 292 PTEFKYS---DAIDPAPKPRTSVAGLMNPLKKWIAHWLFNNLFNKLFD 426
P EFK +A A +PR L PLKKW+ + +F D
Sbjct: 504 PIEFKLEMDPEATPVAQRPRNVAYYLQQPLKKWLDQGVEQGIFEPQTD 551
>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
Length = 541
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 567 TCTQMTATEQWIFLCAAHKTPKECPA-IDYTRHT--LDGAACLLNSNKYF 707
TC+ +++ + CAA T K C A +D + +GA+C+ +YF
Sbjct: 275 TCSPISSGSDYTCACAAGYTGKNCTADVDECSSSPCQNGASCIKKVGRYF 324
>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
Length = 318
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 567 TCTQMTATEQWIFLCAAHKTPKECPA-IDYTRHT--LDGAACLLNSNKYF 707
TC+ +++ + CAA T K C A +D + +GA+C+ +YF
Sbjct: 71 TCSPISSGSDYTCACAAGYTGKNCTADVDECSSSPCQNGASCIKKVGRYF 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,618,971
Number of Sequences: 59808
Number of extensions: 501243
Number of successful extensions: 1308
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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