Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8c09
         (726 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    28   0.34 
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    25   3.2  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    24   4.2  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   5.5  

>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 0.34
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +3

Query: 228 VNIRTSLSKQKYLFAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDSTLAVQQF 407
           V+ R+SL+    LFA  P+     V +   N+P    K     P+   E + +T  +QQ 
Sbjct: 48  VDCRSSLASGSKLFAPEPRVALPRVSVTGINKPTVATKAASTTPE--LELLKAT--IQQL 103

Query: 408 IQQTIRRDPSNL---EAILKMPEVLDE 479
            +Q +     N    E I +M ++L E
Sbjct: 104 EEQNLEMKEQNFRLAEQITRMCQLLQE 130


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 174 VVEVKHNSNKCRRNYQRLVNIRTSLSKQKYLFA 272
           +VE+  N+N   +N+  L  ++  L K +  F+
Sbjct: 109 IVELSENNNALLQNFMELTELKHVLEKTQVFFS 141


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = +3

Query: 228 VNIRTSLSKQKYLFAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDSTLAVQQF 407
           V+ RTSL+    LFA  P+     +     ++P  + K     P    E + +T  +Q+ 
Sbjct: 70  VDCRTSLAPCSKLFAAEPRVALPKLSATGASKPIAEPKAASATPAPELELLRAT--IQRL 127

Query: 408 IQQTIRRDPSN---LEAILKMPEVLDE 479
            +Q       N   LE I  M ++L E
Sbjct: 128 EEQNCAMKEQNAKLLEQITGMCQLLQE 154


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 284  FWWNGEKILLFA*TGS--NVNKP 222
            F WNG++  LF  TGS  + N+P
Sbjct: 1615 FSWNGQEFNLFCSTGSSNSCNRP 1637


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,940
Number of Sequences: 2352
Number of extensions: 17464
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)