Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8c09
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical pr... 224 4e-59
AF125960-4|AAD14738.1| 292|Caenorhabditis elegans Hypothetical ... 36 0.022
Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z71264-4|CAA95831.1| 348|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z74028-1|CAA98424.1| 334|Caenorhabditis elegans Hypothetical pr... 28 5.9
L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily as... 28 5.9
L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily ass... 28 5.9
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 28 5.9
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 28 5.9
Z80789-4|CAC35816.1| 350|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69788-9|CAC35811.1| 350|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69788-6|CAD44118.1| 324|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69788-5|CAD44117.1| 314|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69788-4|CAA93647.1| 341|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69788-3|CAA93648.1| 300|Caenorhabditis elegans Hypothetical pr... 28 7.8
U40061-1|AAA81148.2| 573|Caenorhabditis elegans Hypothetical pr... 28 7.8
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 28 7.8
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 28 7.8
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 28 7.8
>L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical
protein C30A5.3 protein.
Length = 223
Score = 224 bits (548), Expect = 4e-59
Identities = 102/139 (73%), Positives = 113/139 (81%)
Frame = +3
Query: 309 LRRNRPGTKAKDFCRWPDEPFEEMDSTLAVQQFIQQTIRRDPSNLEAILKMPEVLDEGVW 488
+RRN PGTK D+ W FEEMDS L +QQ+IQQTI+ +P+++ IL P DEGVW
Sbjct: 10 VRRNGPGTKRADWNNWSPLAFEEMDSALNIQQYIQQTIKANPADVATILTPPLDQDEGVW 69
Query: 489 KYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTL 668
KYEHLRQFC+ELNGLA+ LQ EC PETC QMTATEQWIFLCAAHK P ECPAIDYTRHTL
Sbjct: 70 KYEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCAAHKNPNECPAIDYTRHTL 129
Query: 669 DGAACLLNSNKYFPSRVNI 725
DGAA LLNSNKYFPSRVNI
Sbjct: 130 DGAATLLNSNKYFPSRVNI 148
>AF125960-4|AAD14738.1| 292|Caenorhabditis elegans Hypothetical
protein T12B3.4 protein.
Length = 292
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Frame = +3
Query: 438 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLC-- 611
+L +K+P + W H F +N + + + C E+C M ++ +L
Sbjct: 103 DLRHAVKLPPSENFDDWLAVHTVDFFNRINLMYGTISDVCTRESCPTMCGGSRYEYLWQD 162
Query: 612 -AAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNI 725
+K P PA Y + +D +N FPS N+
Sbjct: 163 GIEYKKPTRLPAPQYMQLLMDWIEVRINDEHIFPSSTNV 201
>Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 489 KYEHLRQFCMELNGLAVRLQNECKPETCTQMT-ATEQWIFLCAAHKTPKECPAIDYTRHT 665
+YE + E + L ++ + KP +Q T + W F+ A K P CP++
Sbjct: 360 EYEVPEERSAESSDLKIKKNKDGKPRKRSQHTKGNKLWEFIRDALKDPSTCPSVVRWEDP 419
Query: 666 LDGAACLLNSNK 701
++G ++ S K
Sbjct: 420 IEGVFRIVESEK 431
>Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 489 KYEHLRQFCMELNGLAVRLQNECKPETCTQMT-ATEQWIFLCAAHKTPKECPAIDYTRHT 665
+YE + E + L ++ + KP +Q T + W F+ A K P CP++
Sbjct: 360 EYEVPEERSAESSDLKIKKNKDGKPRKRSQHTKGNKLWEFIRDALKDPSTCPSVVRWEDP 419
Query: 666 LDGAACLLNSNK 701
++G ++ S K
Sbjct: 420 IEGVFRIVESEK 431
>Z71264-4|CAA95831.1| 348|Caenorhabditis elegans Hypothetical
protein K07G5.5 protein.
Length = 348
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 481 VFGSMNI*DNFVWSSMDWLCVYKMNANLKHVHK 579
+ GS++I FV SSMD C + MN L ++K
Sbjct: 92 ISGSLSIMSTFVDSSMDIACSFVMNICLSEINK 124
>Z74028-1|CAA98424.1| 334|Caenorhabditis elegans Hypothetical
protein C14C10.1 protein.
Length = 334
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 532 NPLSSIQNCLRCSYFQTPSSNTSGIFKIAS 443
NP S + CS Q+PSSN++G+ S
Sbjct: 2 NPFSDVMRKALCSSPQSPSSNSTGLVPFGS 31
>L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform a protein.
Length = 507
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 386 AIHFFKGFIRPATEVLGFGAGSI--ASEYLNSVGHFFWWNG 270
+IH+ K +RP L FGA S+ AS + S G+ W+G
Sbjct: 403 SIHYNKTLLRPLAGGLAFGATSLPSASNIVFSNGYLDPWSG 443
>L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform b protein.
Length = 568
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 386 AIHFFKGFIRPATEVLGFGAGSI--ASEYLNSVGHFFWWNG 270
+IH+ K +RP L FGA S+ AS + S G+ W+G
Sbjct: 464 SIHYNKTLLRPLAGGLAFGATSLPSASNIVFSNGYLDPWSG 504
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
protein LIN-59 protein.
Length = 1312
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 241 PV*ANKSIFSPF-HQKK*PTEFKYSDAIDPAPKP 339
P+ N +F+ F H KK +F+ D +P+PKP
Sbjct: 1229 PINTNSYVFTEFTHPKKVVRDFRPYDPSNPSPKP 1262
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 241 PV*ANKSIFSPF-HQKK*PTEFKYSDAIDPAPKP 339
P+ N +F+ F H KK +F+ D +P+PKP
Sbjct: 1229 PINTNSYVFTEFTHPKKVVRDFRPYDPSNPSPKP 1262
>Z80789-4|CAC35816.1| 350|Caenorhabditis elegans Hypothetical
protein F09A5.4c protein.
Length = 350
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +3
Query: 429 DPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMT--ATEQWI 602
D + + I +PE +++ W ++ +N L L C ++C M+ T + I
Sbjct: 124 DGNTVAKITSLPEGIEKREWIAHNVLGLFEHVNALCGTLSEVCTQQSCPHMSFPGTSKAI 183
Query: 603 FLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSR 716
+ K + PA+ Y + + + FP++
Sbjct: 184 YTDERGKR-QVYPAVQYIDCVITQCESMSRQEEIFPTK 220
>Z69788-9|CAC35811.1| 350|Caenorhabditis elegans Hypothetical
protein F09A5.4c protein.
Length = 350
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +3
Query: 429 DPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMT--ATEQWI 602
D + + I +PE +++ W ++ +N L L C ++C M+ T + I
Sbjct: 124 DGNTVAKITSLPEGIEKREWIAHNVLGLFEHVNALCGTLSEVCTQQSCPHMSFPGTSKAI 183
Query: 603 FLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSR 716
+ K + PA+ Y + + + FP++
Sbjct: 184 YTDERGKR-QVYPAVQYIDCVITQCESMSRQEEIFPTK 220
>Z69788-6|CAD44118.1| 324|Caenorhabditis elegans Hypothetical
protein F09A5.4e protein.
Length = 324
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +3
Query: 429 DPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMT--ATEQWI 602
D + + I +PE +++ W ++ +N L L C ++C M+ T + I
Sbjct: 98 DGNTVAKITSLPEGIEKREWIAHNVLGLFEHVNALCGTLSEVCTQQSCPHMSFPGTSKAI 157
Query: 603 FLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSR 716
+ K + PA+ Y + + + FP++
Sbjct: 158 YTDERGKR-QVYPAVQYIDCVITQCESMSRQEEIFPTK 194
>Z69788-5|CAD44117.1| 314|Caenorhabditis elegans Hypothetical
protein F09A5.4d protein.
Length = 314
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +3
Query: 429 DPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMT--ATEQWI 602
D + + I +PE +++ W ++ +N L L C ++C M+ T + I
Sbjct: 88 DGNTVAKITSLPEGIEKREWIAHNVLGLFEHVNALCGTLSEVCTQQSCPHMSFPGTSKAI 147
Query: 603 FLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSR 716
+ K + PA+ Y + + + FP++
Sbjct: 148 YTDERGKR-QVYPAVQYIDCVITQCESMSRQEEIFPTK 184
>Z69788-4|CAA93647.1| 341|Caenorhabditis elegans Hypothetical
protein F09A5.4b protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +3
Query: 429 DPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMT--ATEQWI 602
D + + I +PE +++ W ++ +N L L C ++C M+ T + I
Sbjct: 115 DGNTVAKITSLPEGIEKREWIAHNVLGLFEHVNALCGTLSEVCTQQSCPHMSFPGTSKAI 174
Query: 603 FLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSR 716
+ K + PA+ Y + + + FP++
Sbjct: 175 YTDERGKR-QVYPAVQYIDCVITQCESMSRQEEIFPTK 211
>Z69788-3|CAA93648.1| 300|Caenorhabditis elegans Hypothetical
protein F09A5.4a protein.
Length = 300
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +3
Query: 429 DPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMT--ATEQWI 602
D + + I +PE +++ W ++ +N L L C ++C M+ T + I
Sbjct: 74 DGNTVAKITSLPEGIEKREWIAHNVLGLFEHVNALCGTLSEVCTQQSCPHMSFPGTSKAI 133
Query: 603 FLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSR 716
+ K + PA+ Y + + + FP++
Sbjct: 134 YTDERGKR-QVYPAVQYIDCVITQCESMSRQEEIFPTK 170
>U40061-1|AAA81148.2| 573|Caenorhabditis elegans Hypothetical
protein ZK563.2 protein.
Length = 573
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 701 FIAIQQASCSI*SVPCVINGWTFFRSFMCCTQKYPLFCCR 582
FI + Q SC +P +++ W+F +M Q Y F C+
Sbjct: 487 FICVLQNSCKE-FLPKILHNWSFLPIWMRSLQYYDPFMCK 525
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 210 RNYQRLVNIRTSLSKQKYLFAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDST 389
RN +++ + +L K+K I + I N PGT A DEP +
Sbjct: 1281 RNIEKMKKSQENLDKEKSEEKISESKKNQDDSIESPNLPGTPAN---LPVDEPLPPVGRL 1337
Query: 390 LAVQQFIQQTIRRDP 434
V+ + + RRDP
Sbjct: 1338 YIVEHVLPEEYRRDP 1352
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 210 RNYQRLVNIRTSLSKQKYLFAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDST 389
RN +++ + +L K+K I + I N PGT A DEP +
Sbjct: 1281 RNIEKMKKSQENLDKEKSEEKISESKKNQDDSIESPNLPGTPAN---LPVDEPLPPVGRL 1337
Query: 390 LAVQQFIQQTIRRDP 434
V+ + + RRDP
Sbjct: 1338 YIVEHVLPEEYRRDP 1352
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 210 RNYQRLVNIRTSLSKQKYLFAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDST 389
RN +++ + +L K+K I + I N PGT A DEP +
Sbjct: 1281 RNIEKMKKSQENLDKEKSEEKISESKKNQDDSIESPNLPGTPAN---LPVDEPLPPVGRL 1337
Query: 390 LAVQQFIQQTIRRDP 434
V+ + + RRDP
Sbjct: 1338 YIVEHVLPEEYRRDP 1352
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,003,660
Number of Sequences: 27780
Number of extensions: 373473
Number of successful extensions: 932
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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